Variant report

Variant	rs7024245
Chromosome Location	chr9:8264944-8264945
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10116379	0.82[AMR][1000 genomes]
rs10122381	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1027583	0.80[EUR][1000 genomes]
rs1027584	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10758947	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10758948	0.96[ASN][1000 genomes]
rs10758950	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10815816	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10976903	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10976917	0.88[ASN][1000 genomes]
rs10976918	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10976921	0.82[ASN][1000 genomes]
rs10976922	0.82[ASN][1000 genomes]
rs10976923	0.82[ASN][1000 genomes]
rs12551273	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12552574	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1392507	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1392508	0.84[ASN][1000 genomes]
rs1392509	0.84[ASN][1000 genomes]
rs1472535	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1472536	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1500304	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1500305	0.88[ASN][1000 genomes]
rs1546256	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1875240	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1909760	0.81[ASN][1000 genomes]
rs2173709	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3843578	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3847285	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs3858056	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3858057	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3913379	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4084051	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4124865	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6477290	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7020531	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7021246	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7032230	0.81[ASN][1000 genomes]
rs7862136	0.81[ASN][1000 genomes]
rs7864876	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7868789	0.84[CHB][hapmap]
rs7872172	0.83[AMR][1000 genomes]
rs989932	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8414	chr9:7827373-8511613	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv613284	chr9:8165192-8279622	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	diseases
3	nsv1016723	chr9:8223541-8303017	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
4	esv3693381	chr9:8231940-8268051	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv613285	chr9:8244354-8270248	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv466123	chr9:8247628-8270248	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
7	nsv613286	chr9:8247628-8270248	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
8	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
9	nsv892223	chr9:8258921-8318948	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS	miRNA target site	n/a	inside rSNPs	diseases
10	nsv892224	chr9:8263737-8338431	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS	miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8255000-8267800	Weak transcription	Pancreas	Pancrea
2	chr9:8260600-8266000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr9:8262600-8265800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr9:8263200-8265000	Enhancers	Fetal Lung	lung
5	chr9:8263200-8265400	Weak transcription	Ovary	ovary
6	chr9:8263400-8267000	Weak transcription	Fetal Muscle Leg	muscle
7	chr9:8263400-8267800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr9:8263400-8267800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr9:8263400-8267800	Weak transcription	Psoas Muscle	Psoas
10	chr9:8263600-8266400	Weak transcription	Fetal Heart	heart
11	chr9:8263600-8267200	Weak transcription	Colon Smooth Muscle	Colon
12	chr9:8263600-8267600	Weak transcription	Fetal Stomach	stomach
13	chr9:8263600-8268800	Weak transcription	Stomach Mucosa	stomach
14	chr9:8263800-8267800	Weak transcription	Stomach Smooth Muscle	stomach
15	chr9:8264400-8274800	Weak transcription	Fetal Intestine Small	intestine

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