Variant report

Variant	rs7026298
Chromosome Location	chr9:13688782-13688783
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:13686906..13689504-chr9:14312996..14314764,2	MCF-7	breast:
2	chr6:116274902..116275536-chr9:13688718..13689412,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000147862	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12000765	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12002788	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16930601	0.83[EUR][1000 genomes]
rs4740554	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4741324	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs522594	0.90[ASN][1000 genomes]
rs62533191	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7042010	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8192986	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023684	chr9:13529680-13744602	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv540067	chr9:13529680-13744602	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv892587	chr9:13601074-13732363	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv1843958	chr9:13631992-13706651	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv892588	chr9:13667639-13715063	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv1018933	chr9:13669862-13756710	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13687600-13689600	Enhancers	HMEC	breast
2	chr9:13687800-13690000	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr9:13687800-13690200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr9:13688000-13689000	Enhancers	NHEK	skin
5	chr9:13688000-13689400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr9:13688000-13689400	Enhancers	Fetal Heart	heart
7	chr9:13688200-13689000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr9:13688200-13689400	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr9:13688200-13689800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:13688200-13690000	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr9:13688400-13689200	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr9:13688400-13689400	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr9:13688400-13689600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr9:13688400-13689600	Enhancers	Colon Smooth Muscle	Colon
15	chr9:13688600-13688800	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr9:13688600-13688800	Enhancers	HSMM	muscle
17	chr9:13688600-13689000	Enhancers	H1 Cell Line	embryonic stem cell
18	chr9:13688600-13689000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr9:13688600-13689000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr9:13688600-13689000	Enhancers	H9 Cell Line	embryonic stem cell
21	chr9:13688600-13689000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr9:13688600-13689000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
23	chr9:13688600-13689000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr9:13688600-13689000	Flanking Active TSS	Adipose Nuclei	Adipose
25	chr9:13688600-13689000	ZNF genes & repeats	Aorta	Aorta
26	chr9:13688600-13689000	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
27	chr9:13688600-13689000	Enhancers	Left Ventricle	heart
28	chr9:13688600-13689000	Enhancers	Right Atrium	heart
29	chr9:13688600-13689000	Enhancers	Right Ventricle	heart
30	chr9:13688600-13689200	Enhancers	Psoas Muscle	Psoas
31	chr9:13688600-13689200	Enhancers	HUVEC	blood vessel
32	chr9:13688600-13689400	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr9:13688600-13690000	Enhancers	HSMMtube	muscle
34	chr9:13688600-13690200	Enhancers	Fetal Muscle Leg	muscle
35	chr9:13688600-13690200	Enhancers	Skeletal Muscle Male	skeletal muscle

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