Variant report

Variant	rs7029612
Chromosome Location	chr9:101076960-101076961
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101070579..101073591-chr9:101076842..101079263,3	MCF-7	breast:
2	chr9:101076029..101078815-chr9:101516431..101518577,2	MCF-7	breast:
3	chr9:101076714..101079334-chr9:101138741..101140975,3	K562	blood:
4	chr9:101075867..101078208-chr9:101080022..101082370,2	K562	blood:
5	chr9:101074851..101076971-chr9:101866162..101868998,2	MCF-7	breast:
6	chr9:101076038..101079314-chr9:101086093..101088880,3	K562	blood:
7	chr9:101076603..101078214-chr9:101139182..101140975,2	K562	blood:

Variant related genes	Relation type
ENSG00000106799	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10119420	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12349672	0.85[YRI][hapmap]
rs12553553	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831663	chr9:100941048-101109492	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1045780	chr9:100943318-101080389	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv540180	chr9:100943318-101080389	Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv831664	chr9:101024862-101205637	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv519818	chr9:101024887-101092316	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats	Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7029612	TFEC	trans	lymphoblastoid	seeQTL

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101061600-101083400	Weak transcription	Brain Angular Gyrus	brain
2	chr9:101062000-101078000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr9:101069000-101085800	Weak transcription	Right Atrium	heart
4	chr9:101070800-101078000	Weak transcription	Fetal Brain Male	brain
5	chr9:101072000-101078000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr9:101075400-101082200	Enhancers	K562	blood
7	chr9:101076200-101078000	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr9:101076400-101077200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr9:101076400-101077200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr9:101076400-101077400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr9:101076400-101077800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr9:101076400-101078200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr9:101076400-101078200	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr9:101076400-101078600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr9:101076400-101078600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr9:101076400-101079800	Enhancers	Placenta	Placenta
17	chr9:101076600-101077200	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr9:101076600-101077400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr9:101076600-101077800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr9:101076600-101078200	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr9:101076600-101078400	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr9:101076800-101077000	Enhancers	H9 Cell Line	embryonic stem cell
23	chr9:101076800-101077000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
24	chr9:101076800-101077000	Enhancers	NHLF	lung
25	chr9:101076800-101077200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr9:101076800-101077200	Flanking Active TSS	Hela-S3	cervix
27	chr9:101076800-101078000	Enhancers	H1 Cell Line	embryonic stem cell
28	chr9:101076800-101078400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr9:101076800-101078400	Enhancers	NHDF-Ad	bronchial

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