Variant report

Variant	rs7029921
Chromosome Location	chr9:8534137-8534138
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13298042	0.92[ASN][1000 genomes]
rs17572318	0.84[CEU][hapmap];0.88[EUR][1000 genomes]
rs2031212	0.92[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2184978	0.92[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs35379354	0.90[ASN][1000 genomes]
rs35583726	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7023008	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs7024591	0.82[JPT][hapmap]
rs7039690	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs7046918	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7849357	0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7849367	0.92[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv892228	chr9:8482778-8703733	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv831504	chr9:8496277-8665773	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8420600-8557600	Weak transcription	Aorta	Aorta
2	chr9:8518400-8555200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr9:8531400-8534400	Enhancers	Brain Cingulate Gyrus	brain
4	chr9:8531600-8537400	Enhancers	Brain Hippocampus Middle	brain
5	chr9:8532200-8535000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr9:8532600-8534200	Weak transcription	Brain Anterior Caudate	brain
7	chr9:8532800-8534400	Enhancers	Brain Angular Gyrus	brain
8	chr9:8533400-8536600	Weak transcription	Fetal Brain Female	brain
9	chr9:8533400-8552200	Weak transcription	Fetal Brain Male	brain
10	chr9:8533600-8534600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr9:8533800-8534400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:8533800-8534400	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr9:8533800-8534600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr9:8533800-8536600	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr9:8534000-8534400	Weak transcription	Primary hematopoietic stem cells	blood
16	chr9:8534000-8534600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr9:8534000-8535000	Weak transcription	Brain Substantia Nigra	brain
18	chr9:8534000-8536600	Weak transcription	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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