Variant report

Variant	rs703020
Chromosome Location	chr10:28622988-28622989
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1148176	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1626487	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1628126	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1628925	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1629123	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1630506	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1631148	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1673229	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1673230	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1676780	1.00[ASN][1000 genomes]
rs1676781	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1762146	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1762147	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1762148	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1762187	1.00[ASN][1000 genomes]
rs1776089	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1776092	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1776094	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1776114	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1776118	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1776119	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1776120	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1776122	0.85[EUR][1000 genomes]
rs1776123	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1776127	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1776128	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2607536	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2607538	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2782567	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2782568	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2797597	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2797598	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs703019	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs703021	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs786393	1.00[ASN][1000 genomes]
rs786396	1.00[ASN][1000 genomes]
rs9417594	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1041555	chr10:28419399-29304934	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv1037863	chr10:28419399-29378871	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv540521	chr10:28419399-29378871	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	nsv1044938	chr10:28601993-28659440	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28616800-28623000	Weak transcription	Fetal Muscle Leg	muscle
2	chr10:28616800-28623800	Weak transcription	NHLF	lung
3	chr10:28617800-28623000	Weak transcription	Fetal Stomach	stomach
4	chr10:28618800-28624400	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr10:28618800-28626600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr10:28619000-28624600	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr10:28619200-28624600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
8	chr10:28619400-28624600	Enhancers	Primary hematopoietic stem cells	blood
9	chr10:28620000-28623800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr10:28620600-28623800	Flanking Active TSS	Primary T cells from cord blood	blood
11	chr10:28620800-28623200	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr10:28621000-28623400	Enhancers	Thymus	Thymus
13	chr10:28621400-28623000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
14	chr10:28621600-28623200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
15	chr10:28621600-28623800	Enhancers	Primary B cells from peripheral blood	blood
16	chr10:28621600-28625600	Enhancers	Fetal Thymus	thymus
17	chr10:28621800-28624200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
18	chr10:28621800-28624400	Active TSS	Colon Smooth Muscle	Colon
19	chr10:28621800-28624400	Active TSS	Rectal Mucosa Donor 29	rectum
20	chr10:28621800-28624400	Active TSS	Rectal Smooth Muscle	rectum
21	chr10:28622000-28623000	Weak transcription	HSMM	muscle
22	chr10:28622000-28623000	Weak transcription	NH-A	brain
23	chr10:28622000-28623800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr10:28622000-28623800	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
25	chr10:28622000-28623800	Weak transcription	Pancreas	Pancrea
26	chr10:28622000-28624000	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr10:28622000-28624400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
28	chr10:28622000-28624400	Active TSS	Primary T helper naive cells from peripheral blood	blood
29	chr10:28622000-28624400	Active TSS	Primary T killer naive cells fromperipheralblood	blood
30	chr10:28622200-28624400	Active TSS	Duodenum Smooth Muscle	Duodenum
31	chr10:28622400-28623200	Enhancers	GM12878-XiMat	blood
32	chr10:28622400-28623400	Flanking Active TSS	Primary B cells from cord blood	blood
33	chr10:28622400-28623400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr10:28622600-28623000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
35	chr10:28622600-28623200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr10:28622600-28623200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
37	chr10:28622600-28623200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
38	chr10:28622600-28623200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr10:28622600-28623600	Enhancers	NHEK	skin
40	chr10:28622600-28623800	Active TSS	Stomach Smooth Muscle	stomach
41	chr10:28622600-28624000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr10:28622600-28624200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr10:28622800-28623000	Enhancers	Left Ventricle	heart
44	chr10:28622800-28623200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
45	chr10:28622800-28623200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
46	chr10:28622800-28623800	Enhancers	Skeletal Muscle Female	skeletal muscle
47	chr10:28622800-28624200	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
48	chr10:28622800-28624600	Enhancers	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links