Variant report

Variant	rs703174
Chromosome Location	chr3:157493146-157493147
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12629565	0.80[ASN][1000 genomes]
rs12632880	1.00[ASN][1000 genomes]
rs16828324	0.93[ASN][1000 genomes]
rs3914481	0.93[ASN][1000 genomes]
rs57771301	0.87[ASN][1000 genomes]
rs58033165	0.80[ASN][1000 genomes]
rs58893334	0.82[ASN][1000 genomes]
rs73162130	0.93[ASN][1000 genomes]
rs7630717	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592121	chr3:157437068-157593470	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv997770	chr3:157441619-157595315	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs703174	VEPH1	cis	cerebellum	SCAN
rs703174	ARL14	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157492600-157493800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr3:157492800-157493200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:157492800-157493400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:157493000-157494400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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