Variant report

Variant	rs7032525
Chromosome Location	chr9:95882901-95882902
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95881490..95886849-chr9:95891631..95895235,6	K562	blood:
2	chr9:95880402..95885163-chr9:95893735..95897991,9	K562	blood:
3	chr9:95856611..95859611-chr9:95880855..95885285,4	K562	blood:
4	chr9:95856945..95860499-chr9:95877670..95883441,5	MCF-7	breast:
5	chr9:95874739..95878921-chr9:95879079..95884047,10	K562	blood:
6	chr9:95874371..95880149-chr9:95880216..95885255,14	K562	blood:

Variant related genes	Relation type
ENSG00000223446	Chromatin interaction
ENSG00000131669	Chromatin interaction
ENSG00000165233	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10992645	0.96[ASN][1000 genomes]
rs12235416	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12237655	0.96[ASN][1000 genomes]
rs12238760	0.97[ASN][1000 genomes]
rs60629714	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7018885	0.82[ASN][1000 genomes]
rs7033638	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72618189	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1035230	chr9:95770249-95934982	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	esv1824329	chr9:95811604-95921347	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv893578	chr9:95818641-95887320	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	nsv893579	chr9:95855100-95923091	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
7	nsv893580	chr9:95855100-96099377	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
8	nsv893581	chr9:95872216-95930334	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs7032525	NINJ1	cis	Artery Tibial	GTEx
rs7032525	NINJ1	Cis_1M	lymphoblastoid	RTeQTL
rs7032525	NINJ1	cis	Thyroid	GTEx
rs7032525	NINJ1	cis	Esophagus Muscularis	GTEx

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95859600-95889400	Weak transcription	Fetal Kidney	kidney
2	chr9:95870000-95895400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr9:95871000-95894200	Weak transcription	Dnd41	blood
4	chr9:95873400-95888800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr9:95873600-95886000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr9:95874800-95883600	Weak transcription	Primary T cells from cord blood	blood
7	chr9:95876600-95886000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr9:95877000-95889200	Weak transcription	Fetal Brain Female	brain
9	chr9:95877200-95888800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr9:95877400-95883800	Weak transcription	Aorta	Aorta
11	chr9:95877400-95886000	Weak transcription	Brain Germinal Matrix	brain
12	chr9:95878400-95883400	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr9:95878400-95885200	Enhancers	Primary B cells from cord blood	blood
14	chr9:95879000-95884000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr9:95879000-95886000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:95879200-95883800	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr9:95879200-95886000	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr9:95879200-95886000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr9:95879200-95886800	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr9:95879200-95888600	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr9:95879200-95889000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr9:95879400-95886000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr9:95880200-95883200	Enhancers	Spleen	Spleen
24	chr9:95881000-95884000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr9:95881200-95883000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr9:95881200-95883000	Enhancers	Primary T helper cells fromperipheralblood	blood
27	chr9:95881200-95883000	Enhancers	Stomach Mucosa	stomach
28	chr9:95881200-95883200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
29	chr9:95881200-95883200	Enhancers	Gastric	stomach
30	chr9:95881400-95883200	Enhancers	Primary T cells fromperipheralblood	blood
31	chr9:95881400-95883200	Enhancers	Placenta	Placenta
32	chr9:95881400-95883600	Enhancers	Adipose Nuclei	Adipose
33	chr9:95881400-95883800	Enhancers	Brain Hippocampus Middle	brain
34	chr9:95881600-95883000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr9:95881600-95883000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr9:95881600-95883000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
37	chr9:95881600-95883000	Enhancers	Primary T helper naive cells from peripheral blood	blood
38	chr9:95881600-95883000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
39	chr9:95881600-95883000	Enhancers	Primary T killer memory cells from peripheral blood	blood
40	chr9:95881600-95883000	Enhancers	Fetal Heart	heart
41	chr9:95881600-95883000	Enhancers	Ovary	ovary
42	chr9:95881600-95883000	Enhancers	Hela-S3	cervix
43	chr9:95881600-95883200	Enhancers	Primary T helper cells PMA-I stimulated	--
44	chr9:95881600-95883200	Enhancers	Brain Angular Gyrus	brain
45	chr9:95881600-95883200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
46	chr9:95881600-95883200	Enhancers	HMEC	breast
47	chr9:95881600-95883400	Enhancers	Fetal Muscle Trunk	muscle
48	chr9:95881600-95883600	Enhancers	Primary B cells from peripheral blood	blood
49	chr9:95881600-95884200	Enhancers	Primary hematopoietic stem cells	blood
50	chr9:95881800-95883000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links