Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10746996	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10746997	0.85[ASN][1000 genomes]
rs10781345	0.91[ASN][1000 genomes]
rs10781346	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10781348	0.86[ASN][1000 genomes]
rs10869733	0.93[ASN][1000 genomes]
rs10869736	0.86[ASN][1000 genomes]
rs10869737	0.86[ASN][1000 genomes]
rs11144801	0.86[ASN][1000 genomes]
rs11144804	0.85[ASN][1000 genomes]
rs12336492	0.87[ASN][1000 genomes]
rs1495255	0.98[ASN][1000 genomes]
rs3913046	0.86[ASN][1000 genomes]
rs4545165	0.96[ASN][1000 genomes]
rs4745528	0.98[ASN][1000 genomes]
rs6560508	0.87[ASN][1000 genomes]
rs7854188	0.98[ASN][1000 genomes]
rs952503	0.85[ASN][1000 genomes]
rs990559	1.00[ASN][1000 genomes]
rs990560	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv893476	chr9:78768830-78887992	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:78814000-78848200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr9:78816200-78824400	Weak transcription	Duodenum Mucosa	Duodenum
3	chr9:78818800-78823000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr9:78818800-78824400	Weak transcription	Ovary	ovary
5	chr9:78820400-78825200	Weak transcription	Fetal Intestine Small	intestine
6	chr9:78820600-78826800	Weak transcription	Fetal Intestine Large	intestine
7	chr9:78821400-78822200	Enhancers	H1 Cell Line	embryonic stem cell
8	chr9:78821400-78822200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr9:78821400-78822200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr9:78821400-78822200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr9:78821400-78822200	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr9:78821400-78822400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:78821400-78822400	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr9:78821600-78822200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr9:78821600-78822200	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr9:78821600-78822800	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr9:78821600-78826600	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr9:78822000-78830000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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