Variant report

Variant	rs7033521
Chromosome Location	chr9:117909607-117909608
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10125663	0.89[AFR][1000 genomes]
rs10982567	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1335333	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1414137	0.94[YRI][hapmap];0.95[AFR][1000 genomes]
rs1537015	0.90[YRI][hapmap];0.82[AFR][1000 genomes]
rs1537720	0.93[AFR][1000 genomes]
rs4978621	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4979496	0.89[AFR][1000 genomes]
rs4979505	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60632414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6478133	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6478134	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7034038	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs945257	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615250	chr9:117768021-118012841	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv916912	chr9:117770039-118014140	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv831697	chr9:117860416-118023927	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv6681	chr9:117893926-117938609	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117904800-117910000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr9:117904800-117910200	Enhancers	NHDF-Ad	bronchial
3	chr9:117905000-117910000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr9:117905000-117910200	Enhancers	Osteobl	bone
5	chr9:117906800-117910400	Enhancers	Rectal Smooth Muscle	rectum
6	chr9:117907000-117910000	Enhancers	NH-A	brain
7	chr9:117908000-117910400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr9:117908000-117912000	Enhancers	Colon Smooth Muscle	Colon
9	chr9:117908200-117910400	Enhancers	NHLF	lung
10	chr9:117908400-117909800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr9:117908400-117909800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr9:117908400-117909800	Enhancers	NHEK	skin
13	chr9:117908400-117910000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr9:117908400-117910000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr9:117908400-117910000	Enhancers	HSMM	muscle
16	chr9:117908400-117910200	Enhancers	Muscle Satellite Cultured Cells	--
17	chr9:117908400-117910400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr9:117908400-117910800	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr9:117908400-117910800	Enhancers	Fetal Stomach	stomach
20	chr9:117908400-117912200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr9:117908600-117910200	Weak transcription	Stomach Smooth Muscle	stomach
22	chr9:117909000-117909800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr9:117909000-117910000	Enhancers	Placenta Amnion	Placenta Amnion
24	chr9:117909200-117909800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr9:117909200-117909800	Enhancers	Aorta	Aorta
26	chr9:117909200-117909800	Enhancers	Duodenum Smooth Muscle	Duodenum
27	chr9:117909200-117910000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr9:117909400-117909800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
29	chr9:117909600-117909800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr9:117909600-117909800	Bivalent Enhancer	Rectal Mucosa Donor 31	rectum

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