Variant report

Variant	rs7034115
Chromosome Location	chr9:26957911-26957912
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF384	chr9:26957536-26958180	K562	blood:	n/a	n/a
2	IRF1	chr9:26955155-26957920	K562	blood:	n/a	n/a
3	POLR2A	chr9:26957364-26958569	K562	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:26890425..26894629-chr9:26953159..26958312,6	K562	blood:
2	chr9:26885787..26888366-chr9:26956613..26958846,2	MCF-7	breast:
3	chr9:26956517..26958466-chr9:26969685..26972625,2	MCF-7	breast:
4	chr9:26889862..26894629-chr9:26953159..26958871,9	K562	blood:
5	chr9:26891902..26893962-chr9:26955453..26958235,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000234676	TF binding region
ENSG00000120159	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10738762	0.87[ASN][1000 genomes]
rs10757634	0.82[ASN][1000 genomes]
rs10757635	0.85[ASN][1000 genomes]
rs10757636	0.94[ASN][1000 genomes]
rs10812502	0.80[ASN][1000 genomes]
rs10812503	0.96[ASN][1000 genomes]
rs10812504	0.96[ASN][1000 genomes]
rs10812507	0.84[ASN][1000 genomes]
rs10812508	0.84[ASN][1000 genomes]
rs10967629	0.92[ASN][1000 genomes]
rs10967632	0.92[ASN][1000 genomes]
rs10967648	0.81[ASN][1000 genomes]
rs10967652	0.85[ASN][1000 genomes]
rs12237867	0.80[ASN][1000 genomes]
rs1541144	0.96[ASN][1000 genomes]
rs2184438	0.91[ASN][1000 genomes]
rs2184439	0.92[ASN][1000 genomes]
rs3758218	0.96[ASN][1000 genomes]
rs7018585	0.84[ASN][1000 genomes]
rs7020010	0.92[ASN][1000 genomes]
rs7034478	0.96[ASN][1000 genomes]
rs7849248	0.88[ASN][1000 genomes]
rs7860542	0.83[ASN][1000 genomes]
rs7870787	0.91[ASN][1000 genomes]
rs7875068	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528614	chr9:26893662-27074233	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv517269	chr9:26945976-27137242	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv892862	chr9:26956663-27190655	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26954800-26958200	Active TSS	K562	blood
2	chr9:26957000-26961800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr9:26957000-26973800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr9:26957000-26980800	Weak transcription	Lung	lung
5	chr9:26957000-26983200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr9:26957000-26984400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr9:26957000-27024000	Weak transcription	Esophagus	oesophagus
8	chr9:26957200-26958200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr9:26957200-26958200	Weak transcription	Ovary	ovary
10	chr9:26957200-26958400	Enhancers	Colon Smooth Muscle	Colon
11	chr9:26957200-26958400	Weak transcription	Hela-S3	cervix
12	chr9:26957200-26958600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr9:26957200-26961400	Weak transcription	Brain Substantia Nigra	brain
14	chr9:26957200-26961600	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr9:26957200-26961800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:26957200-26961800	Weak transcription	HSMM	muscle
17	chr9:26957200-26962000	Weak transcription	Primary hematopoietic stem cells	blood
18	chr9:26957200-26962200	Weak transcription	Thymus	Thymus
19	chr9:26957200-26976000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr9:26957200-26980800	Weak transcription	Fetal Intestine Large	intestine
21	chr9:26957200-26980800	Weak transcription	Fetal Stomach	stomach
22	chr9:26957200-26982600	Weak transcription	Fetal Muscle Leg	muscle
23	chr9:26957200-26982600	Weak transcription	Left Ventricle	heart
24	chr9:26957200-26983200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr9:26957200-26983200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr9:26957200-26984400	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr9:26957200-26984400	Weak transcription	Primary B cells from peripheral blood	blood
28	chr9:26957200-26984600	Weak transcription	Fetal Muscle Trunk	muscle
29	chr9:26957200-26984800	Weak transcription	Primary B cells from cord blood	blood
30	chr9:26957200-26984800	Weak transcription	Fetal Thymus	thymus
31	chr9:26957200-27026600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr9:26957200-27040000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr9:26957400-26958000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr9:26957400-26958000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr9:26957400-26958400	Enhancers	HepG2	liver
36	chr9:26957400-26961800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr9:26957400-26962000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr9:26957400-26962000	Weak transcription	Liver	Liver
39	chr9:26957400-26962200	Weak transcription	Fetal Lung	lung
40	chr9:26957400-26963800	Weak transcription	NHLF	lung
41	chr9:26957400-26964800	Weak transcription	Primary T cells from cord blood	blood
42	chr9:26957400-26974800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr9:26957400-26978200	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr9:26957400-26980800	Weak transcription	Duodenum Mucosa	Duodenum
45	chr9:26957400-26982800	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr9:26957400-26983200	Weak transcription	Brain Anterior Caudate	brain
47	chr9:26957400-26983400	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr9:26957400-26984600	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr9:26957600-26958400	Enhancers	Fetal Heart	heart
50	chr9:26957600-26959400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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