Variant report

Variant	rs7034591
Chromosome Location	chr9:27151692-27151693
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7035021	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892862	chr9:26956663-27190655	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1016733	chr9:27073650-27264576	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1022313	chr9:27083369-27250505	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1017802	chr9:27088160-27262682	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1019104	chr9:27088160-27358206	Enhancers Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv892863	chr9:27138898-27170934	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:27147800-27155000	Weak transcription	Aorta	Aorta
2	chr9:27149400-27152400	Enhancers	Fetal Stomach	stomach
3	chr9:27149600-27151800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr9:27149600-27152000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr9:27149600-27152400	Enhancers	Duodenum Smooth Muscle	Duodenum
6	chr9:27149600-27152400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr9:27149600-27152400	Enhancers	Rectal Smooth Muscle	rectum
8	chr9:27149600-27152600	Enhancers	Colon Smooth Muscle	Colon
9	chr9:27149600-27154600	Enhancers	HUVEC	blood vessel
10	chr9:27149600-27155400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr9:27149800-27152000	Enhancers	Ovary	ovary
12	chr9:27150000-27151800	Enhancers	Adipose Nuclei	Adipose
13	chr9:27150000-27151800	Enhancers	Right Atrium	heart
14	chr9:27150000-27152400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr9:27150200-27151800	Enhancers	Esophagus	oesophagus
16	chr9:27150200-27151800	Enhancers	Stomach Smooth Muscle	stomach
17	chr9:27150200-27152000	Enhancers	Fetal Muscle Leg	muscle
18	chr9:27150200-27152400	Enhancers	Fetal Lung	lung
19	chr9:27150200-27152600	Enhancers	Fetal Heart	heart
20	chr9:27150200-27152800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr9:27150400-27152400	Enhancers	NHLF	lung
22	chr9:27150400-27152600	Enhancers	Muscle Satellite Cultured Cells	--
23	chr9:27150600-27152200	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr9:27150600-27152600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr9:27150600-27152600	Enhancers	HSMM	muscle
26	chr9:27150800-27151800	Enhancers	NHDF-Ad	bronchial
27	chr9:27150800-27152400	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr9:27150800-27152400	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr9:27150800-27152600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr9:27150800-27152600	Enhancers	HMEC	breast
31	chr9:27150800-27152600	Enhancers	Osteobl	bone
32	chr9:27150800-27153000	Enhancers	NHEK	skin
33	chr9:27150800-27153200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr9:27150800-27158000	Weak transcription	Spleen	Spleen
35	chr9:27151000-27151800	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr9:27151000-27152600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr9:27151000-27153200	Enhancers	HSMMtube	muscle
38	chr9:27151000-27154600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr9:27151000-27154800	Weak transcription	Placenta	Placenta
40	chr9:27151000-27155800	Enhancers	Placenta Amnion	Placenta Amnion
41	chr9:27151000-27158000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr9:27151000-27172800	Weak transcription	Left Ventricle	heart
43	chr9:27151000-27229200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr9:27151200-27164800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr9:27151400-27152000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr9:27151400-27152200	Enhancers	A549	lung
47	chr9:27151400-27152400	Enhancers	Skeletal Muscle Male	skeletal muscle
48	chr9:27151400-27152400	Enhancers	Hela-S3	cervix
49	chr9:27151400-27152600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr9:27151400-27152600	Enhancers	NH-A	brain

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