Variant report

Variant	rs7034820
Chromosome Location	chr9:21678559-21678560
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:21678019..21679658-chr9:21681885..21684334,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1377195	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1377196	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2197008	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7041676	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029634	chr9:21542970-21765286	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv1015623	chr9:21579110-21694039	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
3	nsv892742	chr9:21589041-21707372	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv892743	chr9:21675545-21772064	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21673000-21679400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr9:21676200-21678600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr9:21677200-21679200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr9:21677200-21684600	Enhancers	Hela-S3	cervix
5	chr9:21677400-21678600	Flanking Active TSS	HUVEC	blood vessel
6	chr9:21677600-21678800	Enhancers	HSMM	muscle
7	chr9:21678000-21679200	Weak transcription	NHLF	lung
8	chr9:21678000-21683200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr9:21678000-21688200	Enhancers	HMEC	breast
10	chr9:21678200-21678600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
11	chr9:21678200-21679400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr9:21678200-21679400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr9:21678200-21679400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr9:21678200-21680000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr9:21678200-21680000	Enhancers	NH-A	brain
16	chr9:21678200-21680000	Enhancers	Osteobl	bone
17	chr9:21678200-21681600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr9:21678200-21681600	Enhancers	NHDF-Ad	bronchial
19	chr9:21678200-21681800	Enhancers	NHEK	skin
20	chr9:21678200-21684000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr9:21678400-21679200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr9:21678400-21680000	Flanking Active TSS	A549	lung
23	chr9:21678400-21687400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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