Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:86054433..86056553-chr9:86066145..86068552,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000238608	Chromatin interaction

rSNPs within LD-proxies of this variant (count:4)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1048086	chr9:86040900-86059732	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7034859	PNLDC1	trans	lymphoblastoid	seeQTL

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86047400-86056600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr9:86047400-86059000	Weak transcription	Placenta	Placenta
3	chr9:86047600-86055800	Weak transcription	Esophagus	oesophagus
4	chr9:86047600-86055800	Weak transcription	Ovary	ovary
5	chr9:86047600-86059200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr9:86047600-86062400	Weak transcription	Colon Smooth Muscle	Colon
7	chr9:86048200-86056400	Weak transcription	A549	lung
8	chr9:86053000-86056600	Weak transcription	Fetal Kidney	kidney
9	chr9:86053000-86065400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:86054400-86056800	Enhancers	Pancreas	Pancrea
11	chr9:86055200-86056200	Enhancers	Fetal Heart	heart
12	chr9:86055200-86056200	Enhancers	Stomach Mucosa	stomach
13	chr9:86055200-86056200	Enhancers	Spleen	Spleen
14	chr9:86055200-86056800	Enhancers	Right Ventricle	heart
15	chr9:86055400-86055800	Weak transcription	Gastric	stomach
16	chr9:86055400-86055800	Enhancers	Psoas Muscle	Psoas
17	chr9:86055400-86056800	Enhancers	Left Ventricle	heart
18	chr9:86055400-86057000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr9:86055600-86056000	Enhancers	Right Atrium	heart
20	chr9:86055600-86056000	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr9:86055600-86056000	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr9:86055600-86056800	Enhancers	Aorta	Aorta

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