Variant report

Variant	rs7035263
Chromosome Location	chr9:79369664-79369665
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10119901	0.88[ASN][1000 genomes]
rs10781378	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10869809	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10869814	0.88[ASN][1000 genomes]
rs11145045	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1361860	0.85[ASN][1000 genomes]
rs17784809	0.95[ASN][1000 genomes]
rs1936283	0.88[ASN][1000 genomes]
rs34051249	0.82[ASN][1000 genomes]
rs512781	0.88[ASN][1000 genomes]
rs514673	0.88[ASN][1000 genomes]
rs515381	0.88[ASN][1000 genomes]
rs536897	0.88[ASN][1000 genomes]
rs540598	0.82[ASN][1000 genomes]
rs577144	0.92[ASN][1000 genomes]
rs615037	0.88[ASN][1000 genomes]
rs627176	0.88[ASN][1000 genomes]
rs627587	0.88[ASN][1000 genomes]
rs629806	0.88[ASN][1000 genomes]
rs6560542	0.86[ASN][1000 genomes]
rs670879	0.95[ASN][1000 genomes]
rs673575	0.89[ASN][1000 genomes]
rs7022141	0.86[ASN][1000 genomes]
rs7022379	0.88[ASN][1000 genomes]
rs7025345	0.88[ASN][1000 genomes]
rs7037399	0.88[ASN][1000 genomes]
rs7037532	0.88[ASN][1000 genomes]
rs7040264	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7859406	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7860042	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7868392	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1040363	chr9:79246366-79711737	Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv2758190	chr9:79365865-79673907	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv2759697	chr9:79365865-79673907	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7035263	PRUNE2,LOC392352	cis	cerebellar cortex	BrainEAC

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:79333200-79370000	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr9:79348200-79370200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr9:79348400-79370200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr9:79348400-79370200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr9:79358400-79370800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr9:79361200-79396600	Weak transcription	Aorta	Aorta
7	chr9:79362200-79370400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr9:79364400-79372000	Weak transcription	Brain Hippocampus Middle	brain
9	chr9:79364600-79371200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr9:79364600-79371200	Weak transcription	Brain Substantia Nigra	brain
11	chr9:79364600-79371400	Weak transcription	Brain Angular Gyrus	brain
12	chr9:79364600-79387000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr9:79364800-79370600	Weak transcription	Stomach Smooth Muscle	stomach
14	chr9:79364800-79373600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr9:79364800-79374800	Weak transcription	Colon Smooth Muscle	Colon
16	chr9:79366000-79370200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr9:79366000-79370400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr9:79366000-79371200	Weak transcription	Fetal Muscle Leg	muscle
19	chr9:79366200-79370000	Weak transcription	HSMM	muscle
20	chr9:79366600-79370000	Weak transcription	HSMMtube	muscle
21	chr9:79367000-79370200	Weak transcription	Primary B cells from cord blood	blood
22	chr9:79368800-79370400	Enhancers	Primary B cells from peripheral blood	blood
23	chr9:79369000-79370400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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