Variant report

Variant	rs7035508
Chromosome Location	chr9:79243076-79243077
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs4388513	0.81[EUR][1000 genomes]
rs66911773	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67114445	0.94[EUR][1000 genomes]
rs68110064	0.94[EUR][1000 genomes]
rs72730648	0.81[EUR][1000 genomes]
rs72730650	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv931033	chr9:78850330-79366454	Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv893479	chr9:78971253-79275226	Weak transcription Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv949417	chr9:79078703-79282589	Strong transcription Genic enhancers Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:79224600-79244400	Weak transcription	Brain Angular Gyrus	brain
2	chr9:79225400-79244000	Weak transcription	Brain Hippocampus Middle	brain
3	chr9:79225400-79265600	Weak transcription	Fetal Muscle Leg	muscle
4	chr9:79230200-79248200	Weak transcription	Fetal Stomach	stomach
5	chr9:79232800-79261400	Weak transcription	Colonic Mucosa	Colon
6	chr9:79234000-79246000	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr9:79234200-79246000	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr9:79234200-79252200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr9:79234400-79257800	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr9:79234400-79259600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr9:79234600-79249200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr9:79236000-79245800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr9:79236000-79249200	Weak transcription	NHDF-Ad	bronchial
14	chr9:79236000-79257000	Weak transcription	Osteobl	bone
15	chr9:79236200-79248800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr9:79236200-79252400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr9:79236200-79257400	Weak transcription	Adipose Nuclei	Adipose
18	chr9:79236200-79257600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr9:79236400-79243800	Weak transcription	Fetal Thymus	thymus
20	chr9:79236600-79249000	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr9:79238600-79248400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr9:79238600-79261200	Strong transcription	HSMM	muscle
23	chr9:79239000-79244600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr9:79239600-79244600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr9:79239600-79254400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr9:79239800-79244000	Weak transcription	K562	blood
27	chr9:79240000-79260800	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr9:79240400-79244400	Weak transcription	GM12878-XiMat	blood
29	chr9:79240400-79245800	Weak transcription	Brain Anterior Caudate	brain
30	chr9:79240400-79246000	Weak transcription	Aorta	Aorta
31	chr9:79240400-79246000	Weak transcription	Brain Substantia Nigra	brain
32	chr9:79240400-79246000	Weak transcription	Rectal Smooth Muscle	rectum
33	chr9:79240400-79247800	Weak transcription	Small Intestine	intestine
34	chr9:79240600-79243800	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr9:79240600-79246400	Enhancers	Primary hematopoietic stem cells short term culture	blood
36	chr9:79240600-79246600	Enhancers	Primary neutrophils fromperipheralblood	blood
37	chr9:79241000-79260800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr9:79241200-79244600	Weak transcription	Fetal Intestine Large	intestine
39	chr9:79241200-79247400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr9:79241400-79243400	Enhancers	Primary B cells from cord blood	blood
41	chr9:79241400-79244400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr9:79241400-79244600	Weak transcription	Fetal Intestine Small	intestine
43	chr9:79241400-79245200	Enhancers	Primary hematopoietic stem cells	blood
44	chr9:79241600-79244600	Weak transcription	Colon Smooth Muscle	Colon
45	chr9:79241600-79245000	Enhancers	Primary monocytes fromperipheralblood	blood
46	chr9:79241800-79244600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr9:79241800-79245800	Weak transcription	Duodenum Mucosa	Duodenum
48	chr9:79242400-79243800	Enhancers	Monocytes-CD14+_RO01746	blood
49	chr9:79242400-79246000	Weak transcription	Stomach Mucosa	stomach
50	chr9:79242400-79248800	Strong transcription	Stomach Smooth Muscle	stomach

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