Variant report

Variant	rs7035959
Chromosome Location	chr9:108544880-108544881
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10978265	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893693	chr9:108427062-108683134	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv615116	chr9:108468129-108546438	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv893694	chr9:108486533-108854018	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	esv1798719	chr9:108535272-108546438	Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	n/a
5	nsv1041073	chr9:108535813-108731343	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv508558	chr9:108536115-108611087	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	n/a
7	nsv615133	chr9:108536511-108546438	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv615134	chr9:108536564-108546438	Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
9	esv1846655	chr9:108536712-108569642	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
10	nsv615139	chr9:108536928-108546438	Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108515200-108545000	Weak transcription	K562	blood
2	chr9:108515200-108560600	Weak transcription	Ovary	ovary
3	chr9:108520600-108546400	Weak transcription	Fetal Intestine Small	intestine
4	chr9:108530400-108552600	Weak transcription	Pancreas	Pancrea
5	chr9:108539200-108545000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr9:108539200-108545400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr9:108539200-108547000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr9:108539200-108548400	Weak transcription	Primary B cells from cord blood	blood
9	chr9:108539200-108552200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr9:108542800-108545200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr9:108544800-108545200	Active TSS	H1 Cell Line	embryonic stem cell
12	chr9:108544800-108545200	Active TSS	HUES48 Cell Line	embryonic stem cell
13	chr9:108544800-108545400	Active TSS	H9 Cell Line	embryonic stem cell
14	chr9:108544800-108545600	Active TSS	iPS-15b Cell Line	embryonic stem cell
15	chr9:108544800-108546000	Active TSS	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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