Variant report

Variant	rs7036496
Chromosome Location	chr9:136695132-136695133
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:136693193..136695419-chr9:136705719..136708043,2	MCF-7	breast:
2	chr9:136687210..136690877-chr9:136692524..136697595,4	MCF-7	breast:
3	chr9:136694438..136696917-chr9:136696926..136699565,2	MCF-7	breast:
4	chr9:136694512..136703388-chr9:136855005..136859658,12	MCF-7	breast:
5	chr9:136694028..136696242-chr9:136700979..136702982,2	K562	blood:
6	chr9:136689578..136693594-chr9:136695126..136697537,4	K562	blood:

Variant related genes	Relation type
ENSG00000160293	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12001190	1.00[MEX][hapmap]
rs12338811	1.00[MEX][hapmap]
rs12347121	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2486348	1.00[CEU][hapmap]
rs2488551	1.00[JPT][hapmap]
rs2502752	1.00[JPT][hapmap]
rs2510250	1.00[CHD][hapmap]
rs3025391	1.00[CEU][hapmap]
rs7048856	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894114	chr9:136538798-136779153	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv428546	chr9:136541745-136720872	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv831745	chr9:136593702-136780273	Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv894117	chr9:136600201-136716399	Strong transcription Weak transcription Genic enhancers Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv831746	chr9:136607829-136750740	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv894122	chr9:136632662-136760639	Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv1035272	chr9:136665308-136772256	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv894123	chr9:136682408-136852501	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	esv3481760	chr9:136690631-136695429	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7036496	ARMC10	trans	lymphoblastoid	RTeQTL

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:136658800-136705400	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr9:136659000-136702200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr9:136673200-136705000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr9:136674600-136699000	Weak transcription	Aorta	Aorta
5	chr9:136675200-136728400	Weak transcription	Esophagus	oesophagus
6	chr9:136675400-136703200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr9:136675400-136709400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr9:136675600-136698000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr9:136675600-136704800	Weak transcription	Adipose Nuclei	Adipose
10	chr9:136676000-136699800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr9:136677000-136705000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr9:136679200-136696800	Weak transcription	Gastric	stomach
13	chr9:136680000-136696800	Weak transcription	Stomach Smooth Muscle	stomach
14	chr9:136682200-136701000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr9:136683800-136705000	Weak transcription	NHDF-Ad	bronchial
16	chr9:136684200-136696800	Weak transcription	Osteobl	bone
17	chr9:136684200-136704800	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr9:136686000-136709600	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr9:136686600-136705000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr9:136687000-136697000	Weak transcription	Pancreas	Pancrea
21	chr9:136687600-136705000	Weak transcription	HSMMtube	muscle
22	chr9:136689200-136704800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr9:136691400-136704800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr9:136691400-136705000	Weak transcription	Fetal Kidney	kidney
25	chr9:136691800-136696200	Weak transcription	Primary B cells from cord blood	blood
26	chr9:136691800-136703200	Weak transcription	Colonic Mucosa	Colon
27	chr9:136691800-136704800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr9:136692000-136697400	Weak transcription	Fetal Brain Female	brain
29	chr9:136692000-136700600	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr9:136692000-136700600	Weak transcription	Colon Smooth Muscle	Colon
31	chr9:136692000-136704800	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr9:136692000-136704800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr9:136692000-136705000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr9:136692000-136705000	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr9:136692000-136709800	Weak transcription	NH-A	brain
36	chr9:136692200-136697000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr9:136692200-136697000	Weak transcription	NHLF	lung
38	chr9:136692200-136697200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr9:136692200-136697200	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr9:136692200-136698000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr9:136692200-136698200	Weak transcription	Brain Cingulate Gyrus	brain
42	chr9:136692200-136699200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr9:136692200-136699200	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr9:136692200-136699800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr9:136692200-136700600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr9:136692200-136705000	Weak transcription	Left Ventricle	heart
47	chr9:136692200-136705200	Weak transcription	Right Atrium	heart
48	chr9:136692400-136695600	Weak transcription	Primary monocytes fromperipheralblood	blood
49	chr9:136692400-136696600	Weak transcription	Placenta	Placenta
50	chr9:136692400-136696600	Weak transcription	Lung	lung

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