Variant report

Variant	rs7036964
Chromosome Location	chr9:100002361-100002362
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10217229	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10217329	0.82[EUR][1000 genomes]
rs10733584	0.83[EUR][1000 genomes]
rs10759542	0.82[EUR][1000 genomes]
rs10817300	0.82[EUR][1000 genomes]
rs10817306	0.81[EUR][1000 genomes]
rs10981362	0.81[EUR][1000 genomes]
rs4433262	0.82[EUR][1000 genomes]
rs4507886	0.83[EUR][1000 genomes]
rs7023087	0.81[EUR][1000 genomes]
rs7026287	0.81[EUR][1000 genomes]
rs7038353	0.81[EUR][1000 genomes]
rs7854904	0.83[EUR][1000 genomes]
rs7868052	0.81[EUR][1000 genomes]
rs7875296	0.81[EUR][1000 genomes]
rs9299202	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931946	chr9:99895658-100005099	Bivalent/Poised TSS Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv893608	chr9:99906545-100005128	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7036964	RP11-520B13.4	cis	Esophagus Muscularis	GTEx
rs7036964	RP11-23J9.4	cis	Artery Tibial	GTEx
rs7036964	CCDC180	cis	Artery Tibial	GTEx

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100001200-100011000	Weak transcription	Lung	lung
2	chr9:100001200-100017000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:100001200-100039400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr9:100001400-100003600	Weak transcription	Aorta	Aorta
5	chr9:100001400-100003800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr9:100001400-100005800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr9:100001400-100010800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr9:100001400-100014000	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr9:100001400-100017600	Weak transcription	Left Ventricle	heart
10	chr9:100001400-100017800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr9:100001600-100002400	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr9:100001600-100002400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
13	chr9:100001600-100002400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr9:100001600-100003800	Weak transcription	NH-A	brain
15	chr9:100001600-100005800	Weak transcription	NHEK	skin
16	chr9:100001600-100012800	Weak transcription	Fetal Kidney	kidney
17	chr9:100001600-100014000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr9:100001600-100022200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr9:100001600-100037400	Weak transcription	Primary T cells from cord blood	blood
20	chr9:100001800-100004600	Weak transcription	Fetal Lung	lung
21	chr9:100001800-100005600	Weak transcription	Osteobl	bone
22	chr9:100001800-100005800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr9:100001800-100012800	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr9:100002000-100002400	Enhancers	Brain Germinal Matrix	brain
25	chr9:100002000-100003000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr9:100002000-100003200	Enhancers	Dnd41	blood
27	chr9:100002000-100004200	Weak transcription	Rectal Smooth Muscle	rectum
28	chr9:100002000-100005000	Weak transcription	Brain Anterior Caudate	brain
29	chr9:100002000-100005600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr9:100002000-100005800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr9:100002000-100010400	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr9:100002000-100011000	Weak transcription	Fetal Stomach	stomach
33	chr9:100002000-100011600	Weak transcription	Pancreas	Pancrea
34	chr9:100002000-100013200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr9:100002000-100013400	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr9:100002000-100015200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr9:100002000-100016600	Weak transcription	Duodenum Mucosa	Duodenum
38	chr9:100002000-100016600	Weak transcription	Thymus	Thymus
39	chr9:100002000-100018000	Weak transcription	Fetal Muscle Leg	muscle
40	chr9:100002000-100023000	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr9:100002000-100025400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr9:100002000-100037400	Weak transcription	Fetal Muscle Trunk	muscle
43	chr9:100002000-100037800	Weak transcription	Stomach Smooth Muscle	stomach
44	chr9:100002000-100038600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr9:100002000-100038600	Weak transcription	Fetal Intestine Large	intestine
46	chr9:100002000-100038600	Weak transcription	Fetal Intestine Small	intestine
47	chr9:100002000-100038800	Weak transcription	Primary B cells from peripheral blood	blood
48	chr9:100002000-100038800	Weak transcription	Ovary	ovary
49	chr9:100002000-100038800	Weak transcription	Right Ventricle	heart
50	chr9:100002000-100039000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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