Variant report

Variant	rs7037099
Chromosome Location	chr9:13979872-13979873
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11999100	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12000837	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12351326	1.00[CHB][hapmap]
rs13289170	1.00[CHB][hapmap]
rs7022222	0.83[ASN][1000 genomes]
rs7030514	1.00[ASN][1000 genomes]
rs7030998	1.00[CHB][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7870444	0.91[GIH][hapmap];0.92[LWK][hapmap];0.89[MEX][hapmap];0.81[MKK][hapmap];0.85[YRI][hapmap];0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv892593	chr9:13948798-14233159	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv892594	chr9:13970372-14005286	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7037099	C9orf93	cis	parietal	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13979200-13980000	Enhancers	Fetal Muscle Leg	muscle
2	chr9:13979200-13980200	Enhancers	Duodenum Mucosa	Duodenum
3	chr9:13979400-13980200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr9:13979400-13980200	Enhancers	Fetal Kidney	kidney
5	chr9:13979400-13980200	Enhancers	Hela-S3	cervix
6	chr9:13979400-13981600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr9:13979600-13980000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr9:13979600-13980000	Enhancers	Fetal Lung	lung
9	chr9:13979600-13980600	Enhancers	Fetal Intestine Small	intestine
10	chr9:13979600-13980800	Enhancers	Fetal Intestine Large	intestine
11	chr9:13979800-13980200	Enhancers	Sigmoid Colon	Sigmoid Colon

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links