Variant report

Variant	rs7038627
Chromosome Location	chr9:92692855-92692856
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:92687750..92690637-chr9:92691262..92693318,3	MCF-7	breast:
2	chr9:92691934..92694632-chr9:92847404..92848934,2	MCF-7	breast:
3	chr9:92218809..92222310-chr9:92690732..92694174,4	MCF-7	breast:
4	chr9:92691647..92693844-chr9:92695816..92697738,2	MCF-7	breast:
5	chr9:92686545..92689268-chr9:92692416..92694064,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000130222	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16905955	1.00[EUR][1000 genomes]
rs55958272	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7874149	0.96[LWK][hapmap];0.91[MKK][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv15329	chr9:92678855-92698160	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92689000-92693000	Enhancers	Right Ventricle	heart
2	chr9:92689200-92693000	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr9:92689200-92693200	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr9:92689200-92693400	Enhancers	Fetal Muscle Leg	muscle
5	chr9:92689200-92694000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr9:92689800-92697000	Weak transcription	Gastric	stomach
7	chr9:92689800-92697800	Weak transcription	Brain Angular Gyrus	brain
8	chr9:92690000-92697400	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr9:92690400-92693200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr9:92690800-92695400	Weak transcription	Liver	Liver
11	chr9:92690800-92695600	Weak transcription	Ovary	ovary
12	chr9:92691000-92693000	Enhancers	Brain Germinal Matrix	brain
13	chr9:92691000-92693200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr9:92691000-92693400	Enhancers	Fetal Thymus	thymus
15	chr9:92691200-92693000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr9:92691200-92693000	Enhancers	Muscle Satellite Cultured Cells	--
17	chr9:92691200-92693000	Enhancers	Spleen	Spleen
18	chr9:92691200-92693000	Enhancers	HSMM	muscle
19	chr9:92691200-92693000	Enhancers	HSMMtube	muscle
20	chr9:92691200-92693200	Enhancers	Fetal Heart	heart
21	chr9:92691200-92693200	Enhancers	Fetal Lung	lung
22	chr9:92691200-92693200	Enhancers	Dnd41	blood
23	chr9:92691200-92693400	Enhancers	Fetal Kidney	kidney
24	chr9:92691200-92693800	Enhancers	Primary T cells from cord blood	blood
25	chr9:92691200-92693800	Enhancers	Primary hematopoietic stem cells	blood
26	chr9:92691400-92693000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr9:92691400-92693200	Enhancers	Fetal Stomach	stomach
28	chr9:92691400-92693600	Enhancers	Placenta	Placenta
29	chr9:92691400-92693800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr9:92691600-92693000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr9:92691600-92693000	Enhancers	NH-A	brain
32	chr9:92691600-92693000	Enhancers	NHLF	lung
33	chr9:92691600-92693400	Enhancers	Adipose Nuclei	Adipose
34	chr9:92691600-92693400	Enhancers	Fetal Muscle Trunk	muscle
35	chr9:92691600-92693400	Enhancers	Right Atrium	heart
36	chr9:92691600-92694000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr9:92692200-92693000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr9:92692200-92693000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
39	chr9:92692200-92693200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
40	chr9:92692400-92693000	Enhancers	Primary T cells fromperipheralblood	blood
41	chr9:92692400-92693000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
42	chr9:92692600-92693000	Enhancers	Pancreatic Islets	Pancreatic Islet
43	chr9:92692600-92693200	Enhancers	Lung	lung
44	chr9:92692600-92694000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr9:92692800-92693000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr9:92692800-92693000	Flanking Active TSS	NHDF-Ad	bronchial
47	chr9:92692800-92693200	Enhancers	Brain Anterior Caudate	brain
48	chr9:92692800-92693200	Enhancers	Brain Substantia Nigra	brain
49	chr9:92692800-92694600	Weak transcription	Fetal Intestine Small	intestine
50	chr9:92692800-92695400	Weak transcription	Stomach Smooth Muscle	stomach

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