Variant report

Variant	rs7038818
Chromosome Location	chr9:110383471-110383472
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7847530	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv831683	chr9:110275212-110461288	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv893700	chr9:110365337-110451516	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110378200-110383800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr9:110380600-110384400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:110381600-110383600	Enhancers	Placenta Amnion	Placenta Amnion
4	chr9:110381800-110383600	Enhancers	Rectal Mucosa Donor 29	rectum
5	chr9:110382000-110383600	Enhancers	Fetal Muscle Leg	muscle
6	chr9:110382000-110385000	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr9:110382200-110384200	Enhancers	Fetal Intestine Large	intestine
8	chr9:110382200-110384400	Enhancers	Fetal Intestine Small	intestine
9	chr9:110382600-110383600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr9:110382800-110383600	Weak transcription	Colonic Mucosa	Colon
11	chr9:110382800-110383600	Enhancers	Colon Smooth Muscle	Colon
12	chr9:110383000-110383800	Enhancers	Right Atrium	heart
13	chr9:110383000-110384800	Enhancers	Stomach Mucosa	stomach
14	chr9:110383200-110384400	Enhancers	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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