Variant report

Variant	rs7039265
Chromosome Location	chr9:6002160-6002161
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:5995726..5997463-chr9:6002035..6004271,2	MCF-7	breast:
2	chr9:5997327..6003105-chr9:6004603..6008619,8	K562	blood:

Variant related genes	Relation type
ENSG00000183354	Chromatin interaction
ENSG00000263575	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10739081	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10758728	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2381342	1.00[EUR][1000 genomes]
rs2773341	0.84[ASN][1000 genomes]
rs343482	0.81[ASN][1000 genomes]
rs466053	0.86[AFR][1000 genomes]
rs7019101	1.00[EUR][1000 genomes]
rs7022539	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7046859	1.00[EUR][1000 genomes]
rs7853300	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948847	chr9:5712626-6417677	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv1031086	chr9:5806949-6630686	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv539967	chr9:5806949-6630686	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv892155	chr9:5825768-6044937	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv892156	chr9:5892375-6011757	Weak transcription Genic enhancers Strong transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv1015450	chr9:5915640-6114652	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:5940000-6006800	Weak transcription	Gastric	stomach
2	chr9:5948000-6006000	Weak transcription	Right Ventricle	heart
3	chr9:5950600-6006000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr9:5957400-6004400	Weak transcription	Brain Germinal Matrix	brain
5	chr9:5967200-6006000	Weak transcription	Colonic Mucosa	Colon
6	chr9:5968400-6005600	Weak transcription	Fetal Kidney	kidney
7	chr9:5972200-6005800	Weak transcription	NH-A	brain
8	chr9:5974000-6006800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr9:5975200-6005800	Weak transcription	Fetal Stomach	stomach
10	chr9:5977400-6004800	Weak transcription	Fetal Muscle Trunk	muscle
11	chr9:5977400-6005600	Weak transcription	NHLF	lung
12	chr9:5977400-6005800	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr9:5977400-6006800	Weak transcription	Pancreas	Pancrea
14	chr9:5977400-6007000	Weak transcription	Spleen	Spleen
15	chr9:5982800-6005200	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr9:5983200-6004200	Weak transcription	Osteobl	bone
17	chr9:5983400-6004200	Weak transcription	NHDF-Ad	bronchial
18	chr9:5987200-6005200	Weak transcription	Fetal Muscle Leg	muscle
19	chr9:5987200-6006200	Weak transcription	Thymus	Thymus
20	chr9:5987800-6004000	Weak transcription	Dnd41	blood
21	chr9:5987800-6004200	Weak transcription	Hela-S3	cervix
22	chr9:5988000-6003800	Weak transcription	Fetal Intestine Large	intestine
23	chr9:5988000-6004200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr9:5988000-6005600	Weak transcription	Adipose Nuclei	Adipose
25	chr9:5988000-6005600	Weak transcription	Fetal Lung	lung
26	chr9:5988000-6006200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr9:5988200-6003800	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr9:5988200-6005600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr9:5988200-6005800	Weak transcription	HSMM	muscle
30	chr9:5988200-6006000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr9:5988600-6004000	Weak transcription	Fetal Thymus	thymus
32	chr9:5988600-6004200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr9:5988600-6004600	Weak transcription	Primary hematopoietic stem cells	blood
34	chr9:5988600-6004800	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr9:5988600-6005800	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr9:5988800-6003400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr9:5988800-6004000	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr9:5988800-6004200	Weak transcription	Primary B cells from peripheral blood	blood
39	chr9:5988800-6005600	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr9:5989000-6006600	Weak transcription	Placenta	Placenta
41	chr9:5990200-6005400	Weak transcription	Fetal Intestine Small	intestine
42	chr9:5991800-6006800	Weak transcription	Esophagus	oesophagus
43	chr9:5994000-6004200	Weak transcription	Fetal Brain Male	brain
44	chr9:5994000-6005200	Weak transcription	Left Ventricle	heart
45	chr9:5996800-6002400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
46	chr9:5997000-6004200	Weak transcription	Liver	Liver
47	chr9:5997000-6004400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr9:5997200-6005800	Weak transcription	Stomach Mucosa	stomach
49	chr9:5997200-6006000	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr9:5997200-6006000	Weak transcription	Right Atrium	heart

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