Variant report

Variant	rs7039633
Chromosome Location	chr9:14881629-14881630
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10124579	0.80[ASN][1000 genomes]
rs10511599	1.00[CEU][hapmap]
rs10810279	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10810280	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10810281	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10810282	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10961764	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10961766	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12555055	0.80[ASN][1000 genomes]
rs12555623	0.84[CHB][hapmap]
rs16932372	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2381976	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7039423	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713613	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7870274	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7870579	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8181058	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv915804	chr9:14182608-14903050	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv613637	chr9:14524438-15011915	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv831518	chr9:14760638-14953501	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv892617	chr9:14791348-14889834	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv1018416	chr9:14846753-14921247	Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv613647	chr9:14852141-15016475	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	esv3390567	chr9:14852461-14891880	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14860000-14883800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr9:14877200-14889400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr9:14877800-14883800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr9:14877800-14888400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr9:14878600-14888200	Weak transcription	Fetal Kidney	kidney
6	chr9:14880600-14884200	Enhancers	HepG2	liver
7	chr9:14880800-14882000	Enhancers	Fetal Lung	lung
8	chr9:14880800-14882000	Enhancers	Fetal Stomach	stomach
9	chr9:14881000-14882000	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr9:14881000-14882000	Enhancers	Small Intestine	intestine
11	chr9:14881000-14882200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:14881000-14882800	Enhancers	Fetal Intestine Large	intestine
13	chr9:14881200-14883600	Weak transcription	Aorta	Aorta
14	chr9:14881200-14889200	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr9:14881200-14904600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr9:14881400-14881800	Weak transcription	Duodenum Mucosa	Duodenum
17	chr9:14881400-14881800	Weak transcription	Pancreas	Pancrea
18	chr9:14881400-14881800	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr9:14881400-14883200	Weak transcription	Adipose Nuclei	Adipose
20	chr9:14881400-14889000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr9:14881400-14889400	Weak transcription	Fetal Muscle Leg	muscle
22	chr9:14881600-14882000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr9:14881600-14882000	Weak transcription	Fetal Intestine Small	intestine
24	chr9:14881600-14883200	Weak transcription	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links