Variant report

Variant	rs7040595
Chromosome Location	chr9:96444108-96444109
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96442742..96446259-chr9:96719078..96722660,3	MCF-7	breast:
2	chr9:96443766..96445914-chr9:96765340..96767005,2	MCF-7	breast:
3	chr9:96443987..96444856-chr9:96763439..96764242,2	MCF-7	breast:
4	chr9:96443866..96445187-chr9:96726929..96728716,7	MCF-7	breast:
5	chr9:96443546..96446066-chr9:96715342..96717948,2	MCF-7	breast:
6	chr9:96443001..96444886-chr9:96710905..96713769,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000131668	Chromatin interaction
ENSG00000235601	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10125475	1.00[CEU][hapmap]
rs7027062	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7028689	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893586	chr9:96363859-96493773	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv1036609	chr9:96375217-96477641	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv893587	chr9:96383605-96451784	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96412600-96445000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:96413000-96444800	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr9:96436800-96447000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr9:96437800-96444800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr9:96439600-96444800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr9:96439800-96444800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr9:96439800-96444800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr9:96440200-96444400	Weak transcription	A549	lung
9	chr9:96440400-96444200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr9:96440400-96444400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr9:96440400-96444800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr9:96440600-96444400	Weak transcription	Primary B cells from peripheral blood	blood
13	chr9:96440600-96444600	Weak transcription	Fetal Lung	lung
14	chr9:96440600-96444800	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr9:96440600-96447600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr9:96440800-96444200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr9:96440800-96444400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr9:96440800-96444400	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr9:96440800-96444600	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr9:96440800-96444800	Weak transcription	Left Ventricle	heart
21	chr9:96440800-96445600	Weak transcription	NHLF	lung
22	chr9:96440800-96447400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr9:96441000-96444200	Weak transcription	Esophagus	oesophagus
24	chr9:96441000-96444400	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr9:96441000-96446400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr9:96441000-96447200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr9:96441400-96444400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr9:96441400-96444400	Weak transcription	Duodenum Mucosa	Duodenum
29	chr9:96441400-96444600	Weak transcription	Colonic Mucosa	Colon
30	chr9:96442200-96446200	Weak transcription	Lung	lung
31	chr9:96442400-96444200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr9:96442400-96444200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr9:96442400-96444400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr9:96442400-96444400	Weak transcription	Brain Germinal Matrix	brain
35	chr9:96442400-96444400	Weak transcription	Right Ventricle	heart
36	chr9:96442400-96446200	Weak transcription	Thymus	Thymus
37	chr9:96442400-96447400	Weak transcription	Adipose Nuclei	Adipose
38	chr9:96442400-96447600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr9:96442600-96444400	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr9:96442600-96447600	Weak transcription	Primary neutrophils fromperipheralblood	blood
41	chr9:96442800-96449200	Weak transcription	Fetal Muscle Leg	muscle
42	chr9:96443000-96444600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr9:96443200-96444200	Weak transcription	Fetal Stomach	stomach
44	chr9:96443200-96444200	Weak transcription	Spleen	Spleen
45	chr9:96443200-96444400	Enhancers	Stomach Smooth Muscle	stomach
46	chr9:96443400-96444600	Flanking Active TSS	HepG2	liver
47	chr9:96443600-96444200	Enhancers	Gastric	stomach
48	chr9:96443600-96444400	Enhancers	Liver	Liver
49	chr9:96443600-96445200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
50	chr9:96443800-96444400	Bivalent Enhancer	Stomach Mucosa	stomach

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