Variant report

Variant	rs7041856
Chromosome Location	chr9:110096921-110096922
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:110044860..110047881-chr9:110095955..110100656,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119318	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11573726	0.89[AFR][1000 genomes]
rs7028803	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869351	chr9:109593212-110191170	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110058600-110098600	Weak transcription	Small Intestine	intestine
2	chr9:110065600-110098600	Strong transcription	Dnd41	blood
3	chr9:110070200-110104400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr9:110070400-110099400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr9:110071400-110103000	Weak transcription	Stomach Mucosa	stomach
6	chr9:110079400-110097400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr9:110079600-110098800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr9:110079800-110097600	Strong transcription	HSMM	muscle
9	chr9:110079800-110098000	Strong transcription	HUES6 Cell Line	embryonic stem cell
10	chr9:110080200-110097200	Strong transcription	Primary T helper cells fromperipheralblood	blood
11	chr9:110080600-110097000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr9:110080600-110097400	Strong transcription	Primary B cells from cord blood	blood
13	chr9:110080600-110097800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr9:110084000-110097800	Strong transcription	Hela-S3	cervix
15	chr9:110084800-110098800	Strong transcription	HUES64 Cell Line	embryonic stem cell
16	chr9:110085400-110097800	Strong transcription	Liver	Liver
17	chr9:110086200-110097200	Strong transcription	HepG2	liver
18	chr9:110086200-110097600	Strong transcription	NHLF	lung
19	chr9:110087200-110098600	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr9:110087400-110097200	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr9:110087600-110103400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr9:110088400-110097200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr9:110088400-110097800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr9:110088400-110097800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr9:110088400-110098800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr9:110088400-110101400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr9:110088600-110097000	Strong transcription	GM12878-XiMat	blood
28	chr9:110088600-110098200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr9:110088600-110098400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr9:110088600-110098600	Weak transcription	Fetal Brain Male	brain
31	chr9:110088600-110101600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr9:110089000-110097000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr9:110089600-110097000	Strong transcription	HUES48 Cell Line	embryonic stem cell
34	chr9:110089600-110097800	Strong transcription	Osteobl	bone
35	chr9:110089600-110098000	Strong transcription	K562	blood
36	chr9:110089800-110099400	Strong transcription	Placenta	Placenta
37	chr9:110090000-110097200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
38	chr9:110090200-110097000	Strong transcription	Primary hematopoietic stem cells	blood
39	chr9:110090200-110097600	Strong transcription	Primary T cells fromperipheralblood	blood
40	chr9:110090200-110097600	Strong transcription	Fetal Thymus	thymus
41	chr9:110090200-110097800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr9:110090400-110097000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr9:110090400-110097000	Strong transcription	Duodenum Mucosa	Duodenum
44	chr9:110090400-110097000	Strong transcription	Fetal Lung	lung
45	chr9:110090400-110098600	Strong transcription	Fetal Muscle Leg	muscle
46	chr9:110090400-110098600	Strong transcription	HUVEC	blood vessel
47	chr9:110090400-110101800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr9:110090600-110097000	Strong transcription	Cortex derived primary cultured neurospheres	brain
49	chr9:110090600-110097000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr9:110090600-110097000	Strong transcription	Thymus	Thymus

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