Variant report

Variant	rs7044155
Chromosome Location	chr9:2638823-2638824
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:2621566..2623636-chr9:2638581..2641950,3	MCF-7	breast:
2	chr9:2620516..2623469-chr9:2637966..2639825,2	K562	blood:
3	chr9:2638405..2640226-chr9:2640407..2642094,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000236404	Chromatin interaction
ENSG00000147852	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10812379	0.84[TSI][hapmap];0.92[YRI][hapmap];0.81[EUR][1000 genomes]
rs33967773	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6149	0.85[CHB][hapmap];0.83[CHD][hapmap]
rs7035616	0.87[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7044107	0.91[CEU][hapmap];0.80[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020530	chr9:1870197-2658587	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv530929	chr9:1998911-2925112	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv529508	chr9:2267812-2684272	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv916750	chr9:2430846-2826706	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv531564	chr9:2452325-2700375	Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv1017581	chr9:2494815-3172020	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	nsv539934	chr9:2494815-3172020	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:2623800-2641000	Weak transcription	Esophagus	oesophagus
2	chr9:2624200-2641000	Weak transcription	Aorta	Aorta
3	chr9:2624400-2641200	Weak transcription	Fetal Kidney	kidney
4	chr9:2624400-2643000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr9:2624400-2643200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr9:2625000-2641000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr9:2627200-2648400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr9:2630600-2639800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr9:2630600-2641000	Weak transcription	Gastric	stomach
10	chr9:2630600-2641200	Weak transcription	Lung	lung
11	chr9:2633000-2639800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr9:2633200-2643200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:2633200-2646000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr9:2633400-2640000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr9:2633600-2656600	Weak transcription	Colon Smooth Muscle	Colon
16	chr9:2634000-2643000	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr9:2634000-2645000	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr9:2634200-2645400	Weak transcription	HSMMtube	muscle
19	chr9:2634400-2639400	Weak transcription	Fetal Brain Male	brain
20	chr9:2634400-2639800	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr9:2634400-2641000	Weak transcription	Right Ventricle	heart
22	chr9:2634400-2648200	Weak transcription	Placenta	Placenta
23	chr9:2634600-2639000	Weak transcription	Pancreas	Pancrea
24	chr9:2634600-2639200	Weak transcription	Right Atrium	heart
25	chr9:2634600-2643200	Weak transcription	NHLF	lung
26	chr9:2634800-2643400	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr9:2635000-2643200	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr9:2635000-2652600	Strong transcription	Dnd41	blood
29	chr9:2635200-2639800	Weak transcription	Left Ventricle	heart
30	chr9:2635200-2641000	Weak transcription	Fetal Stomach	stomach
31	chr9:2635200-2641400	Weak transcription	Fetal Heart	heart
32	chr9:2635200-2655000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr9:2635200-2656200	Strong transcription	HUES48 Cell Line	embryonic stem cell
34	chr9:2635400-2643200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr9:2635400-2656000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr9:2635400-2656800	Strong transcription	HUES64 Cell Line	embryonic stem cell
37	chr9:2635400-2656800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
38	chr9:2635600-2640200	Weak transcription	Brain Angular Gyrus	brain
39	chr9:2635600-2647600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr9:2635600-2655000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
41	chr9:2635800-2656000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr9:2635800-2657800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr9:2636400-2639400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr9:2636600-2639600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr9:2636600-2639800	Weak transcription	Brain Cingulate Gyrus	brain
46	chr9:2636800-2639600	Weak transcription	Brain Substantia Nigra	brain
47	chr9:2636800-2639800	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr9:2636800-2640200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr9:2636800-2641000	Weak transcription	Brain Hippocampus Middle	brain
50	chr9:2636800-2643200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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