Variant report

Variant	rs7046235
Chromosome Location	chr9:8320624-8320625
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10976908	1.00[EUR][1000 genomes]
rs10976909	1.00[EUR][1000 genomes]
rs12340115	1.00[EUR][1000 genomes]
rs2211593	1.00[EUR][1000 genomes]
rs73640903	1.00[EUR][1000 genomes]
rs7858123	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8414	chr9:7827373-8511613	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv892224	chr9:8263737-8338431	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS	miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8310800-8321800	Weak transcription	Fetal Brain Female	brain
2	chr9:8310800-8323000	Weak transcription	Brain Germinal Matrix	brain
3	chr9:8311200-8322600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr9:8312200-8322600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr9:8312200-8338200	Weak transcription	Brain Angular Gyrus	brain
6	chr9:8312800-8322000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr9:8313800-8329400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr9:8314600-8321800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr9:8315400-8323000	Weak transcription	Brain Anterior Caudate	brain
10	chr9:8316000-8329600	Weak transcription	Ovary	ovary
11	chr9:8318200-8329000	Weak transcription	Fetal Muscle Trunk	muscle
12	chr9:8319000-8322400	Weak transcription	Brain Hippocampus Middle	brain
13	chr9:8319000-8322800	Weak transcription	Fetal Brain Male	brain
14	chr9:8319200-8322400	Weak transcription	Brain Substantia Nigra	brain
15	chr9:8319800-8320800	Strong transcription	Fetal Lung	lung
16	chr9:8320200-8322600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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