Variant report

Variant	rs7046326
Chromosome Location	chr9:16847520-16847521
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10756823	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10810647	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1339550	1.00[CHB][hapmap];0.82[JPT][hapmap];0.95[ASN][1000 genomes]
rs4961501	1.00[CHB][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59057888	0.97[ASN][1000 genomes]
rs60176654	0.95[ASN][1000 genomes]
rs60618682	0.97[ASN][1000 genomes]
rs67322332	0.97[ASN][1000 genomes]
rs7044268	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs7047512	0.95[ASN][1000 genomes]
rs7868157	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv892650	chr9:16696187-16950860	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv892651	chr9:16816755-16869240	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv892652	chr9:16843128-16958312	Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
5	esv3483621	chr9:16847379-16847524	Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv3483622	chr9:16847394-16847521	Weak transcription	n/a	n/a	inside rSNPs	diseases
7	esv1378850	chr9:16847395-16847520	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16829200-16852800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:16829800-16864200	Weak transcription	NH-A	brain
3	chr9:16831000-16859600	Weak transcription	HSMM	muscle
4	chr9:16831200-16852600	Weak transcription	Fetal Lung	lung
5	chr9:16831200-16863400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr9:16831200-16864400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr9:16833800-16863800	Weak transcription	NHLF	lung
8	chr9:16834600-16852600	Weak transcription	Fetal Stomach	stomach
9	chr9:16835200-16848400	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr9:16836200-16864400	Weak transcription	NHDF-Ad	bronchial
11	chr9:16838800-16852000	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr9:16840400-16852000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr9:16840600-16849400	Weak transcription	Ovary	ovary
14	chr9:16841000-16848200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr9:16842200-16852000	Weak transcription	Colon Smooth Muscle	Colon
16	chr9:16843000-16853200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr9:16843400-16850600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr9:16845200-16849600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr9:16846000-16851200	Weak transcription	Fetal Muscle Leg	muscle
20	chr9:16846600-16848200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr9:16846600-16852000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr9:16846600-16852800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr9:16847000-16848200	Weak transcription	H1 Cell Line	embryonic stem cell

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