Variant report

Variant	rs7046543
Chromosome Location	chr9:15184095-15184096
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10738389	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs1575469	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs2199598	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2489543	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2800591	0.86[CEU][hapmap]
rs3853429	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs566820	1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7860410	0.81[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs971836	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831519	chr9:15018160-15209127	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1031340	chr9:15163004-15332769	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv524381	chr9:15165032-15202417	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15156200-15185400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr9:15156600-15194200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr9:15156800-15190400	Weak transcription	Brain Anterior Caudate	brain
4	chr9:15156800-15211800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr9:15159000-15211200	Weak transcription	HMEC	breast
6	chr9:15159200-15205800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr9:15162800-15193000	Weak transcription	Spleen	Spleen
8	chr9:15163000-15233000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr9:15163200-15185400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr9:15163200-15186800	Weak transcription	Fetal Kidney	kidney
11	chr9:15163800-15185200	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr9:15166000-15185200	Weak transcription	Pancreas	Pancrea
13	chr9:15166200-15211200	Weak transcription	NH-A	brain
14	chr9:15166400-15185200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr9:15166600-15185200	Weak transcription	Lung	lung
16	chr9:15167000-15196400	Weak transcription	Psoas Muscle	Psoas
17	chr9:15167400-15189000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr9:15167400-15205600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr9:15167600-15185400	Weak transcription	Colonic Mucosa	Colon
20	chr9:15167800-15193400	Strong transcription	Primary T cells fromperipheralblood	blood
21	chr9:15167800-15196200	Weak transcription	Fetal Muscle Trunk	muscle
22	chr9:15168000-15196800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr9:15168200-15206800	Weak transcription	NHEK	skin
24	chr9:15169000-15193400	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr9:15169200-15196600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr9:15169600-15184600	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr9:15169600-15186800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr9:15170400-15211000	Weak transcription	Brain Angular Gyrus	brain
29	chr9:15170800-15189400	Weak transcription	Osteobl	bone
30	chr9:15171000-15228600	Weak transcription	Stomach Mucosa	stomach
31	chr9:15171200-15185400	Weak transcription	Esophagus	oesophagus
32	chr9:15172600-15192800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr9:15173000-15194400	Weak transcription	Brain Hippocampus Middle	brain
34	chr9:15173000-15196000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr9:15174000-15185200	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr9:15174800-15193000	Weak transcription	Fetal Thymus	thymus
37	chr9:15175200-15193400	Weak transcription	HSMM	muscle
38	chr9:15176000-15194400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr9:15176200-15197000	Weak transcription	HSMMtube	muscle
40	chr9:15176400-15187800	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr9:15176600-15185400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr9:15177000-15191600	Weak transcription	Brain Cingulate Gyrus	brain
43	chr9:15177000-15213000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr9:15177400-15187400	Weak transcription	Ovary	ovary
45	chr9:15177600-15184400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr9:15178000-15186800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr9:15178400-15191400	Strong transcription	Primary T helper cells PMA-I stimulated	--
48	chr9:15178600-15193200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr9:15178600-15193400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr9:15178800-15193200	Strong transcription	Rectal Mucosa Donor 29	rectum

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