Variant report

Variant	rs7046600
Chromosome Location	chr9:136794749-136794750
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:136793962..136795502-chr9:136795861..136797463,2	MCF-7	breast:
2	chr9:136737226..136739729-chr9:136793825..136795449,2	MCF-7	breast:
3	chr9:136794454..136797160-chr9:136800180..136802224,2	MCF-7	breast:
4	chr9:136787421..136789227-chr9:136794557..136796260,2	MCF-7	breast:
5	chr9:136793047..136795733-chr9:136795850..136797855,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10993867	0.81[ASN][1000 genomes]
rs10993868	0.84[ASN][1000 genomes]
rs2492056	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3780786	0.92[ASN][1000 genomes]
rs56766962	0.88[ASN][1000 genomes]
rs57238201	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57607949	0.96[ASN][1000 genomes]
rs57945847	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7027703	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7036180	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894123	chr9:136682408-136852501	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv894124	chr9:136716399-136870787	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv894125	chr9:136723520-136931957	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv894127	chr9:136747832-136811772	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv894128	chr9:136753246-136906752	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv1046310	chr9:136762829-136872226	Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv894130	chr9:136767346-136906752	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
8	nsv615741	chr9:136785840-136807283	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv831748	chr9:136788484-136944326	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
10	nsv894131	chr9:136792765-136906752	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:136753000-136813200	Weak transcription	Aorta	Aorta
2	chr9:136765800-136797200	Weak transcription	HSMMtube	muscle
3	chr9:136774800-136802000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr9:136777800-136796600	Weak transcription	HUVEC	blood vessel
5	chr9:136780600-136796800	Weak transcription	Ovary	ovary
6	chr9:136781000-136799400	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr9:136781000-136800400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr9:136781200-136798600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr9:136781200-136802200	Weak transcription	Hela-S3	cervix
10	chr9:136781200-136804600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr9:136781800-136797000	Weak transcription	Esophagus	oesophagus
12	chr9:136782000-136809000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr9:136782800-136797200	Weak transcription	Osteobl	bone
14	chr9:136783400-136797200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr9:136783800-136801000	Weak transcription	Rectal Smooth Muscle	rectum
16	chr9:136783800-136802200	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr9:136784000-136819800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr9:136784800-136799600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr9:136785200-136796800	Weak transcription	HSMM	muscle
20	chr9:136785200-136797000	Weak transcription	Right Atrium	heart
21	chr9:136785200-136799600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr9:136785400-136796600	Weak transcription	Fetal Lung	lung
23	chr9:136785400-136797200	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr9:136785400-136797200	Weak transcription	Adipose Nuclei	Adipose
25	chr9:136785600-136796200	Weak transcription	Lung	lung
26	chr9:136785800-136796200	Weak transcription	Right Ventricle	heart
27	chr9:136785800-136796400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr9:136786400-136796200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr9:136788200-136802000	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr9:136789200-136794800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr9:136790000-136802000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr9:136790200-136796600	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr9:136790400-136796600	Weak transcription	Liver	Liver
34	chr9:136790600-136795800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr9:136791000-136797200	Enhancers	Fetal Brain Male	brain
36	chr9:136791200-136800400	Enhancers	Cortex derived primary cultured neurospheres	brain
37	chr9:136791600-136794800	Strong transcription	NHEK	skin
38	chr9:136791800-136795000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr9:136792000-136799800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr9:136792000-136802000	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr9:136792200-136796400	Strong transcription	HepG2	liver
42	chr9:136792400-136799600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr9:136792600-136795000	Genic enhancers	GM12878-XiMat	blood
44	chr9:136792600-136796200	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr9:136792600-136796400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr9:136792600-136796400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr9:136792800-136794800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr9:136793000-136795000	Enhancers	Brain Cingulate Gyrus	brain
49	chr9:136793000-136795000	Strong transcription	Placenta Amnion	Placenta Amnion
50	chr9:136793000-136795600	Strong transcription	NHLF	lung

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