Variant report

Variant	rs7047800
Chromosome Location	chr9:116733555-116733556
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:116730757..116736109-chr9:116740436..116744614,4	MCF-7	breast:
2	chr9:116722915..116725861-chr9:116733110..116736433,3	MCF-7	breast:
3	chr9:116728310..116730174-chr9:116732664..116734514,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs7034374	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7047767	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116717200-116754600	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr9:116717400-116735600	Weak transcription	Fetal Heart	heart
3	chr9:116720400-116754200	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr9:116720800-116736400	Weak transcription	Aorta	Aorta
5	chr9:116720800-116750600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr9:116721200-116735600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr9:116721200-116735600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr9:116721200-116750800	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr9:116721200-116756400	Weak transcription	NHEK	skin
10	chr9:116721400-116751200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr9:116725000-116736400	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr9:116725400-116735400	Weak transcription	Osteobl	bone
13	chr9:116727000-116733800	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr9:116727600-116735400	Weak transcription	NHDF-Ad	bronchial
15	chr9:116728200-116754600	Weak transcription	Thymus	Thymus
16	chr9:116728800-116735400	Weak transcription	HSMMtube	muscle
17	chr9:116729000-116739800	Weak transcription	Spleen	Spleen
18	chr9:116729200-116733800	Weak transcription	HUVEC	blood vessel
19	chr9:116729200-116736600	Weak transcription	Gastric	stomach
20	chr9:116729800-116734800	Weak transcription	Ovary	ovary
21	chr9:116730000-116735400	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr9:116730000-116743200	Weak transcription	Liver	Liver
23	chr9:116730400-116734600	Weak transcription	Stomach Mucosa	stomach
24	chr9:116730400-116735800	Weak transcription	Duodenum Mucosa	Duodenum
25	chr9:116731200-116735000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr9:116731400-116734400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr9:116731400-116734400	Strong transcription	Fetal Lung	lung
28	chr9:116731400-116735000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr9:116731800-116735000	Strong transcription	NHLF	lung
30	chr9:116731800-116755600	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr9:116732000-116734000	Strong transcription	Fetal Muscle Trunk	muscle
32	chr9:116732000-116734200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr9:116732000-116735200	Weak transcription	Lung	lung
34	chr9:116732000-116735400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr9:116732000-116750600	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr9:116732000-116750600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr9:116732000-116750600	Weak transcription	HMEC	breast
38	chr9:116732000-116753000	Weak transcription	Esophagus	oesophagus
39	chr9:116732200-116733800	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr9:116732200-116734400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr9:116732200-116735000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr9:116732200-116735000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr9:116732200-116735000	Strong transcription	Fetal Muscle Leg	muscle
44	chr9:116732200-116735200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr9:116732200-116735600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr9:116732200-116735600	Weak transcription	Fetal Intestine Large	intestine
47	chr9:116732200-116735800	Strong transcription	Fetal Stomach	stomach
48	chr9:116732200-116736400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr9:116732200-116743600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr9:116732200-116750000	Weak transcription	HUES6 Cell Line	embryonic stem cell

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