Variant report

Variant	rs7048241
Chromosome Location	chr9:105123781-105123782
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10118155	0.81[AMR][1000 genomes]
rs10120340	0.81[AMR][1000 genomes]
rs1160209	0.82[AMR][1000 genomes]
rs1364816	0.93[AFR][1000 genomes]
rs1923972	0.82[AMR][1000 genomes]
rs1923973	0.82[AMR][1000 genomes]
rs1923974	0.82[AMR][1000 genomes]
rs2209060	0.81[AMR][1000 genomes]
rs7026250	0.81[AMR][1000 genomes]
rs7037131	0.84[AFR][1000 genomes]
rs73661248	0.86[ASN][1000 genomes]
rs73661249	0.86[ASN][1000 genomes]
rs73661250	0.86[ASN][1000 genomes]
rs73661251	0.86[ASN][1000 genomes]
rs7861486	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs977861	0.82[AMR][1000 genomes]
rs977862	0.82[AMR][1000 genomes]
rs977863	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048227	chr9:104546761-105162810	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv893642	chr9:104904454-105158032	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv831675	chr9:105013834-105184661	Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv428541	chr9:105044345-105201140	Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv893647	chr9:105046926-105124832	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv893648	chr9:105074656-105135055	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv466451	chr9:105077400-105127708	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv615029	chr9:105077400-105135055	Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv1041375	chr9:105085872-105126911	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:105122800-105124000	Enhancers	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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