Variant report

Variant	rs7049345
Chromosome Location	chrX:109627848-109627849
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12014072	1.00[GIH][hapmap]
rs16985971	1.00[GIH][hapmap]
rs16985974	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs16985977	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs16985983	1.00[CEU][hapmap]
rs17003969	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs2147051	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs41482749	1.00[GIH][hapmap]
rs5985463	1.00[GIH][hapmap]
rs6567857	1.00[CEU][hapmap]
rs6642761	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap]
rs7054756	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap]
rs760953	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap]
rs7878637	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518116	chrX:109424029-109630707	Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv530248	chrX:109436208-109743686	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	esv2758583	chrX:109581771-109711481	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv2758884	chrX:109581771-109711481	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:109623200-109628400	Enhancers	HSMM	muscle
2	chrX:109624000-109628200	Enhancers	Muscle Satellite Cultured Cells	--
3	chrX:109624200-109628400	Enhancers	Osteobl	bone
4	chrX:109624800-109628200	Enhancers	HMEC	breast
5	chrX:109625000-109628400	Enhancers	NH-A	brain
6	chrX:109625400-109628000	Enhancers	HSMMtube	muscle
7	chrX:109625400-109628400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chrX:109625400-109628400	Enhancers	NHDF-Ad	bronchial
9	chrX:109625600-109628200	Enhancers	K562	blood
10	chrX:109625800-109628200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chrX:109626000-109628200	Enhancers	NHLF	lung
12	chrX:109626400-109628000	Enhancers	NHEK	skin
13	chrX:109626400-109638000	Weak transcription	Placenta Amnion	Placenta Amnion
14	chrX:109626600-109628400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chrX:109627200-109628000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chrX:109627800-109628200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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