Variant report

Variant	rs7056091
Chromosome Location	chrX:109528876-109528877
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:109528503..109530798-chrX:109656379..109658054,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12009207	1.00[MEX][hapmap]
rs16985949	0.96[LWK][hapmap];0.97[MKK][hapmap];0.86[YRI][hapmap]
rs17003963	0.89[ASW][hapmap];0.92[YRI][hapmap]
rs764171	0.93[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3369563	chrX:109079631-109573656	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	142 gene(s)	inside rSNPs	diseases
2	nsv518116	chrX:109424029-109630707	Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv530248	chrX:109436208-109743686	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv7036	chrX:109484702-109529468	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:109514600-109530400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chrX:109521800-109529000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chrX:109522000-109531000	Weak transcription	Primary T cells from cord blood	blood
4	chrX:109522200-109529000	Weak transcription	Stomach Mucosa	stomach
5	chrX:109523400-109529000	Enhancers	Muscle Satellite Cultured Cells	--
6	chrX:109523400-109531400	Enhancers	NHDF-Ad	bronchial
7	chrX:109525200-109529000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chrX:109525200-109529000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chrX:109525200-109533000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chrX:109526000-109529800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chrX:109526200-109532400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chrX:109526200-109543400	Weak transcription	K562	blood
13	chrX:109526400-109530200	Enhancers	Osteobl	bone
14	chrX:109527000-109529000	Weak transcription	NHLF	lung
15	chrX:109527400-109529400	Enhancers	HMEC	breast
16	chrX:109527400-109529400	Enhancers	NH-A	brain
17	chrX:109527400-109532000	Enhancers	Hela-S3	cervix
18	chrX:109527400-109533400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chrX:109527600-109529200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chrX:109527600-109529400	Enhancers	Placenta	Placenta
21	chrX:109527600-109529800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chrX:109527600-109530000	Enhancers	NHEK	skin
23	chrX:109527600-109530400	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chrX:109527600-109532600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chrX:109527600-109537400	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chrX:109527800-109529000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chrX:109527800-109529000	Enhancers	A549	lung
28	chrX:109527800-109529400	Enhancers	HSMM	muscle
29	chrX:109528000-109529000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chrX:109528000-109529400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chrX:109528200-109529200	Weak transcription	HUVEC	blood vessel
32	chrX:109528200-109537400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chrX:109528600-109529000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chrX:109528600-109529200	Weak transcription	HSMMtube	muscle
35	chrX:109528800-109531600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links