Variant report

Variant	rs7056510
Chromosome Location	chr1:171053889-171053890
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12074485	1.00[EUR][1000 genomes]
rs1920141	1.00[EUR][1000 genomes]
rs28363517	1.00[EUR][1000 genomes]
rs28363551	1.00[EUR][1000 genomes]
rs28363567	1.00[EUR][1000 genomes]
rs28363580	1.00[EUR][1000 genomes]
rs2901481	1.00[EUR][1000 genomes]
rs56784659	1.00[EUR][1000 genomes]
rs61289330	1.00[EUR][1000 genomes]
rs7471584	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001228	chr1:170885787-171452579	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
2	esv14617	chr1:171016086-171726961	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv1005902	chr1:171036690-171254916	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
4	nsv535203	chr1:171036690-171254916	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:171051400-171054000	Weak transcription	Fetal Kidney	kidney
2	chr1:171052800-171055600	Enhancers	Fetal Heart	heart
3	chr1:171053000-171056000	Enhancers	Liver	Liver
4	chr1:171053400-171054000	Enhancers	Left Ventricle	heart
5	chr1:171053600-171055000	Enhancers	Right Ventricle	heart
6	chr1:171053600-171056800	Weak transcription	Fetal Intestine Small	intestine
7	chr1:171053600-171058000	Weak transcription	Small Intestine	intestine
8	chr1:171053800-171058400	Weak transcription	Fetal Intestine Large	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links