Variant report

Variant	rs7068483
Chromosome Location	chr10:46078163-46078164
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:46074816..46082903-chr10:46083299..46090228,15	K562	blood:

Variant related genes	Relation type
ENSG00000165406	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11239587	0.89[YRI][hapmap]
rs11528544	0.90[YRI][hapmap]
rs17157854	0.80[YRI][hapmap]
rs3824617	1.00[YRI][hapmap]
rs7067803	0.81[AFR][1000 genomes]
rs74130837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74130843	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430166	chr10:45668894-46148794	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv993428	chr10:45742877-46224333	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv895108	chr10:45878908-46224333	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv895109	chr10:45882741-46210665	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv895112	chr10:46012620-46202216	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv1041417	chr10:46021181-46088061	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1052233	chr10:46024620-46088061	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv2761592	chr10:46072872-46090202	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:46072600-46086600	Weak transcription	Small Intestine	intestine
2	chr10:46075800-46078400	Enhancers	HepG2	liver
3	chr10:46076200-46078200	Flanking Active TSS	GM12878-XiMat	blood
4	chr10:46076400-46085600	Weak transcription	HSMMtube	muscle
5	chr10:46076600-46078200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr10:46076600-46078200	Enhancers	Fetal Intestine Large	intestine
7	chr10:46076600-46078200	Enhancers	Stomach Mucosa	stomach
8	chr10:46076600-46078800	Enhancers	Liver	Liver
9	chr10:46076600-46080400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr10:46076800-46078200	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr10:46076800-46078200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr10:46076800-46078200	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr10:46076800-46081800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr10:46076800-46087000	Weak transcription	Brain Hippocampus Middle	brain
15	chr10:46076800-46087800	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr10:46076800-46087800	Weak transcription	Brain Angular Gyrus	brain
17	chr10:46076800-46088000	Weak transcription	Colonic Mucosa	Colon
18	chr10:46076800-46088000	Weak transcription	Stomach Smooth Muscle	stomach
19	chr10:46076800-46089000	Weak transcription	Right Ventricle	heart
20	chr10:46077000-46078200	Enhancers	Rectal Mucosa Donor 29	rectum
21	chr10:46077000-46078400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr10:46077000-46085400	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr10:46077000-46085600	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr10:46077400-46087800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr10:46077400-46087800	Weak transcription	Colon Smooth Muscle	Colon
26	chr10:46077600-46078200	Enhancers	K562	blood
27	chr10:46077600-46078400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr10:46077600-46087400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr10:46077600-46088400	Weak transcription	Osteobl	bone
30	chr10:46077800-46085400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr10:46077800-46085400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr10:46077800-46085400	Weak transcription	Duodenum Mucosa	Duodenum
33	chr10:46077800-46086200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr10:46077800-46086200	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr10:46077800-46087000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr10:46077800-46087400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr10:46077800-46087800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr10:46077800-46088400	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr10:46077800-46088400	Weak transcription	NHLF	lung
40	chr10:46078000-46079800	Weak transcription	Primary B cells from peripheral blood	blood
41	chr10:46078000-46080000	Weak transcription	Primary hematopoietic stem cells	blood
42	chr10:46078000-46080200	Weak transcription	Primary B cells from cord blood	blood
43	chr10:46078000-46080200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr10:46078000-46080200	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr10:46078000-46081400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr10:46078000-46087200	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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