Variant report

Variant	rs7069644
Chromosome Location	chr10:21548466-21548467
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:21461521..21464243-chr10:21547978..21550972,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000078114	Chromatin interaction
ENSG00000231920	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10828225	0.84[CEU][hapmap];0.86[GIH][hapmap]
rs10828226	0.82[EUR][1000 genomes]
rs11012613	1.00[ASN][1000 genomes]
rs12762123	1.00[ASN][1000 genomes]
rs12762293	1.00[ASN][1000 genomes]
rs2359929	0.82[EUR][1000 genomes]
rs28718643	1.00[ASN][1000 genomes]
rs35199186	1.00[ASN][1000 genomes]
rs67484996	0.96[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7076532	0.82[EUR][1000 genomes]
rs7090954	0.87[EUR][1000 genomes]
rs7092555	1.00[ASN][1000 genomes]
rs71486488	1.00[ASN][1000 genomes]
rs7894121	0.84[CEU][hapmap];1.00[ASN][1000 genomes]
rs7896926	1.00[ASN][1000 genomes]
rs7905278	0.83[EUR][1000 genomes]
rs7910610	0.86[GIH][hapmap];0.82[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv971871	chr10:21460392-21579987	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7069644	NEBL	cis	multi-tissue	Pritchard

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21522000-21549600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr10:21522200-21549200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr10:21524000-21549000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr10:21524000-21549400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:21530600-21549600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr10:21539600-21549400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr10:21543200-21550800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr10:21546000-21550000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr10:21547400-21548600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:21547400-21554600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr10:21547600-21549000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr10:21548000-21548600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr10:21548000-21549200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr10:21548200-21548600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr10:21548200-21549200	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr10:21548400-21548600	Enhancers	K562	blood
17	chr10:21548400-21549400	Enhancers	Brain Anterior Caudate	brain
18	chr10:21548400-21550000	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr10:21548400-21550600	Enhancers	Ovary	ovary
20	chr10:21548400-21551200	Enhancers	Fetal Lung	lung

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