Variant report

Variant	rs7069668
Chromosome Location	chr10:117923114-117923115
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11197567	1.00[CHB][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs4751579	0.80[CEU][hapmap]
rs7921425	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428568	chr10:117806874-117972993	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3449389	chr10:117806874-118102404	Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117915600-117924200	Weak transcription	Fetal Muscle Trunk	muscle
2	chr10:117918400-117923200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:117921800-117923600	Enhancers	Pancreas	Pancrea
4	chr10:117922000-117923600	Enhancers	Fetal Brain Male	brain
5	chr10:117922200-117923200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr10:117922400-117923600	Enhancers	Brain Germinal Matrix	brain
7	chr10:117922400-117923600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
8	chr10:117922400-117924200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr10:117922600-117924200	Enhancers	Brain Anterior Caudate	brain
10	chr10:117922600-117924400	Enhancers	Brain Hippocampus Middle	brain
11	chr10:117922800-117923400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:117922800-117924200	Enhancers	Brain Angular Gyrus	brain
13	chr10:117922800-117924400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr10:117923000-117923200	ZNF genes & repeats	Esophagus	oesophagus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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