Variant report

Variant	rs7071550
Chromosome Location	chr10:92714333-92714334
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs1001846	0.82[AMR][1000 genomes]
rs1072491	0.81[AMR][1000 genomes]
rs10785977	0.81[AMR][1000 genomes]
rs10785978	0.81[AMR][1000 genomes]
rs10785979	0.81[AMR][1000 genomes]
rs10785980	0.82[AMR][1000 genomes]
rs10785981	0.81[AMR][1000 genomes]
rs10881861	0.81[AMR][1000 genomes]
rs10881864	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10881865	0.82[AMR][1000 genomes]
rs10881866	0.81[AMR][1000 genomes]
rs10881870	0.81[AMR][1000 genomes]
rs10881871	0.81[AMR][1000 genomes]
rs11186383	0.82[AMR][1000 genomes]
rs11186384	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11186385	0.82[AMR][1000 genomes]
rs11186390	0.82[AMR][1000 genomes]
rs11186396	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11186398	0.81[AMR][1000 genomes]
rs11186399	0.81[AMR][1000 genomes]
rs1122870	0.82[AMR][1000 genomes]
rs11528048	0.82[AMR][1000 genomes]
rs11593014	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11596841	0.82[AMR][1000 genomes]
rs11812869	0.82[AMR][1000 genomes]
rs12570633	0.81[AMR][1000 genomes]
rs12573344	0.81[AMR][1000 genomes]
rs12772494	0.82[AMR][1000 genomes]
rs12778021	0.82[AMR][1000 genomes]
rs12779258	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12779755	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12780222	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12780522	0.82[AMR][1000 genomes]
rs1334580	0.82[AMR][1000 genomes]
rs1334582	0.82[AMR][1000 genomes]
rs1544217	0.81[AMR][1000 genomes]
rs2141375	0.82[AMR][1000 genomes]
rs2420498	0.81[AMR][1000 genomes]
rs28849130	0.82[AMR][1000 genomes]
rs3885868	0.81[AMR][1000 genomes]
rs4285793	0.91[AMR][1000 genomes]
rs4411211	0.81[AMR][1000 genomes]
rs4423105	0.81[AMR][1000 genomes]
rs4439428	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4553280	0.81[AMR][1000 genomes]
rs4595456	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4639845	0.80[AMR][1000 genomes]
rs4639846	0.81[AMR][1000 genomes]
rs4933627	0.82[AMR][1000 genomes]
rs4933630	0.82[AMR][1000 genomes]
rs6583740	0.82[AMR][1000 genomes]
rs6583741	0.82[AMR][1000 genomes]
rs7067705	0.82[AMR][1000 genomes]
rs7071167	0.82[AMR][1000 genomes]
rs7071323	0.82[AMR][1000 genomes]
rs7071533	0.82[AMR][1000 genomes]
rs7071662	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7075411	0.82[AMR][1000 genomes]
rs7079028	0.81[AMR][1000 genomes]
rs7083495	0.82[AMR][1000 genomes]
rs7093432	0.82[AMR][1000 genomes]
rs7099297	0.82[AMR][1000 genomes]
rs7099420	0.82[AMR][1000 genomes]
rs7099671	0.82[AMR][1000 genomes]
rs7895456	0.81[AMR][1000 genomes]
rs7897141	0.82[AMR][1000 genomes]
rs7897403	0.82[AMR][1000 genomes]
rs7897603	0.82[AMR][1000 genomes]
rs7897624	0.82[AMR][1000 genomes]
rs7906208	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv19293	chr10:92708763-92723506	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92707600-92719400	Weak transcription	HMEC	breast
2	chr10:92707800-92719200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr10:92708000-92714400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr10:92713800-92714800	Strong transcription	Dnd41	blood
5	chr10:92714200-92715400	ZNF genes & repeats	Fetal Thymus	thymus

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