Variant report

Variant	rs7075385
Chromosome Location	chr10:52859486-52859487
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:52855387..52858289-chr10:52859088..52861078,2	K562	blood:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10761829	0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10761830	0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2339627	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2339629	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2339630	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2339631	0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2339669	0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2339672	1.00[CHB][hapmap];0.88[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2339674	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2879520	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2879521	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2879522	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4245018	0.81[ASN][1000 genomes]
rs4271340	0.86[AMR][1000 genomes]
rs4303185	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4347326	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4347327	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4366435	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4387306	0.81[ASN][1000 genomes]
rs4403758	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4436494	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4489691	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4500435	0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4592377	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4935012	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4935222	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4935223	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4935224	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs61849730	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7073476	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7090485	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7090857	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7091200	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7094279	0.81[AMR][1000 genomes]
rs7096759	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7096925	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7097013	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7896662	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7897669	0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7897940	0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7898748	0.81[ASN][1000 genomes]
rs7901390	0.81[ASN][1000 genomes]
rs7902979	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7910047	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7913072	0.84[ASN][1000 genomes]
rs7913145	0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7915110	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7918898	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7921037	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7921154	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7922015	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9299465	0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9299466	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9414816	1.00[CHB][hapmap];0.88[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9414820	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9414821	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9414824	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9414826	0.81[ASN][1000 genomes]
rs9415719	0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9415720	0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9415722	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9415724	0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831873	chr10:52710610-52899540	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv895394	chr10:52793177-52866503	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
4	nsv825378	chr10:52855771-52908439	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52844000-52877200	Weak transcription	Fetal Stomach	stomach
2	chr10:52850200-52863400	Weak transcription	NHLF	lung
3	chr10:52853000-52871200	Weak transcription	Fetal Muscle Leg	muscle
4	chr10:52853200-52860000	Weak transcription	Fetal Lung	lung
5	chr10:52855200-52866200	Weak transcription	Psoas Muscle	Psoas
6	chr10:52856400-52861800	Weak transcription	Right Atrium	heart
7	chr10:52856600-52877200	Weak transcription	Colon Smooth Muscle	Colon
8	chr10:52857600-52877200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr10:52858200-52860200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:52858600-52859600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr10:52858800-52866200	Weak transcription	Left Ventricle	heart
12	chr10:52858800-52873000	Weak transcription	Aorta	Aorta
13	chr10:52859400-52863400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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