Variant report

Variant	rs7075651
Chromosome Location	chr10:97068409-97068410
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97067527..97069717-chr10:97074996..97076961,2	MCF-7	breast:
2	chr10:97046965..97049082-chr10:97066729..97068931,2	K562	blood:
3	chr10:97063446..97065363-chr10:97067014..97069636,2	K562	blood:
4	chr10:97067141..97070104-chr10:97084315..97087296,2	K562	blood:
5	chr10:97065717..97068641-chr10:97084315..97087112,2	K562	blood:
6	chr10:97067391..97069707-chr10:97088772..97090844,2	MCF-7	breast:
7	chr10:97063446..97065566-chr10:97068136..97069871,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1410601	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv15160	chr10:96942869-97074756	Bivalent Enhancer Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv552021	chr10:97053404-97071334	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97055600-97072800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr10:97057600-97070200	Weak transcription	Spleen	Spleen
3	chr10:97063400-97072400	Weak transcription	Fetal Brain Female	brain
4	chr10:97063400-97073600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr10:97063600-97068800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:97063600-97070400	Weak transcription	Lung	lung
7	chr10:97064000-97073200	Weak transcription	Fetal Muscle Leg	muscle
8	chr10:97064600-97070400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr10:97064600-97078200	Weak transcription	Colonic Mucosa	Colon
10	chr10:97064800-97068800	Weak transcription	Gastric	stomach
11	chr10:97064800-97070000	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr10:97064800-97070000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr10:97064800-97070200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:97064800-97070600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr10:97065000-97070200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr10:97065400-97069400	Weak transcription	Small Intestine	intestine
17	chr10:97066000-97073000	Weak transcription	Fetal Intestine Large	intestine
18	chr10:97066000-97073600	Weak transcription	Fetal Intestine Small	intestine
19	chr10:97067000-97069000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr10:97067000-97070800	Enhancers	Stomach Mucosa	stomach
21	chr10:97067200-97069400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr10:97067200-97073400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr10:97067400-97069200	Enhancers	HUVEC	blood vessel
24	chr10:97067400-97069600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr10:97067600-97069000	Enhancers	Fetal Heart	heart
26	chr10:97067600-97069000	Enhancers	HepG2	liver
27	chr10:97067600-97069200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr10:97067600-97069200	Enhancers	Psoas Muscle	Psoas
29	chr10:97067600-97069200	Flanking Active TSS	A549	lung
30	chr10:97067600-97069200	Enhancers	NHDF-Ad	bronchial
31	chr10:97067600-97069200	Enhancers	NHEK	skin
32	chr10:97067600-97069400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr10:97067600-97069400	Enhancers	Left Ventricle	heart
34	chr10:97067600-97069600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr10:97067600-97069600	Enhancers	Right Atrium	heart
36	chr10:97067600-97069600	Enhancers	NHLF	lung
37	chr10:97067600-97069800	Enhancers	Aorta	Aorta
38	chr10:97067600-97069800	Enhancers	HMEC	breast
39	chr10:97067600-97070400	Enhancers	Duodenum Mucosa	Duodenum
40	chr10:97067600-97070800	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr10:97067600-97071200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr10:97067800-97068600	Flanking Active TSS	NH-A	brain
43	chr10:97067800-97068600	Flanking Active TSS	Osteobl	bone
44	chr10:97067800-97069200	Weak transcription	Esophagus	oesophagus
45	chr10:97067800-97071000	Enhancers	HUES6 Cell Line	embryonic stem cell
46	chr10:97068000-97069400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr10:97068200-97068600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr10:97068200-97068600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr10:97068200-97068600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr10:97068200-97068600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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