Variant report

Variant	rs7076025
Chromosome Location	chr10:92802969-92802970
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr10:92802967-92803456	HCT-116	colon:	n/a	chr10:92803213-92803220
2	USF1	chr10:92802930-92803106	HepG2	liver:	n/a	chr10:92803039-92803050
3	RAD21	chr10:92802945-92803515	A549	lung:	n/a	chr10:92803213-92803220
4	RAD21	chr10:92802946-92803403	ECC-1	luminal epithelium:	n/a	chr10:92803213-92803220
5	USF1	chr10:92802888-92803186	HepG2	liver:	n/a	chr10:92803039-92803050
6	SMC3	chr10:92802956-92803443	HepG2	liver:	n/a	chr10:92803212-92803226
7	SMC3	chr10:92802715-92803684	SK-N-SH	brain:	n/a	chr10:92803212-92803226
8	RAD21	chr10:92802967-92803446	H1-hESC	embryonic stem cell:	n/a	chr10:92803213-92803220
9	CTCF	chr10:92802881-92803547	A549	lung:	n/a	chr10:92803212-92803233 chr10:92803211-92803227 chr10:92803210-92803228 chr10:92803215-92803223
10	MAX	chr10:92802939-92803205	H1-hESC	embryonic stem cell:	n/a	chr10:92803041-92803051 chr10:92803037-92803052 chr10:92803040-92803050 chr10:92803041-92803051 chr10:92803039-92803054 chr10:92803040-92803050 chr10:92803039-92803052 chr10:92803041-92803050 chr10:92803040-92803051 chr10:92803039-92803052 chr10:92803042-92803051 chr10:92803040-92803049 chr10:92803040-92803051 chr10:92803039-92803052 chr10:92803039-92803052
11	RAD21	chr10:92802946-92803519	ECC-1	luminal epithelium:	n/a	chr10:92803213-92803220
12	RAD21	chr10:92802885-92803431	A549	lung:	n/a	chr10:92803213-92803220
13	CTCF	chr10:92802969-92803448	HCT-116	colon:	n/a	chr10:92803212-92803233 chr10:92803211-92803227 chr10:92803210-92803228 chr10:92803215-92803223
14	MAX	chr10:92802892-92803165	K562	blood:	n/a	chr10:92803041-92803051 chr10:92803037-92803052 chr10:92803040-92803050 chr10:92803041-92803051 chr10:92803039-92803054 chr10:92803040-92803050 chr10:92803039-92803052 chr10:92803041-92803050 chr10:92803040-92803051 chr10:92803039-92803052 chr10:92803042-92803051 chr10:92803040-92803049 chr10:92803040-92803051 chr10:92803039-92803052 chr10:92803039-92803052
15	USF2	chr10:92802951-92803174	HepG2	liver:	n/a	n/a
16	RAD21	chr10:92802911-92803488	HepG2	liver:	n/a	chr10:92803213-92803220
17	RAD21	chr10:92802894-92803611	SK-N-SH	brain:	n/a	chr10:92803213-92803220
18	RAD21	chr10:92802892-92803413	HepG2	liver:	n/a	chr10:92803213-92803220
19	MAX	chr10:92802892-92803218	NB4	blood:	n/a	chr10:92803041-92803051 chr10:92803037-92803052 chr10:92803040-92803050 chr10:92803041-92803051 chr10:92803039-92803054 chr10:92803040-92803050 chr10:92803039-92803052 chr10:92803041-92803050 chr10:92803040-92803051 chr10:92803039-92803052 chr10:92803042-92803051 chr10:92803040-92803049 chr10:92803040-92803051 chr10:92803039-92803052 chr10:92803039-92803052
20	RAD21	chr10:92802944-92803402	H1-hESC	embryonic stem cell:	n/a	chr10:92803213-92803220
21	CTCF	chr10:92802468-92803593	SK-N-SH	brain:	n/a	chr10:92803212-92803233 chr10:92803211-92803227 chr10:92803210-92803228 chr10:92803215-92803223
22	MAX	chr10:92802917-92803117	HepG2	liver:	n/a	chr10:92803041-92803051 chr10:92803037-92803052 chr10:92803040-92803050 chr10:92803041-92803051 chr10:92803039-92803054 chr10:92803040-92803050 chr10:92803039-92803052 chr10:92803041-92803050 chr10:92803040-92803051 chr10:92803039-92803052 chr10:92803042-92803051 chr10:92803040-92803049 chr10:92803040-92803051 chr10:92803039-92803052 chr10:92803039-92803052
23	RAD21	chr10:92802861-92803470	HCT-116	colon:	n/a	chr10:92803213-92803220

No.	Distal block	Cell Line	Cell type
1	chr10:92802747..92803726-chr10:93010975..93011501,3	K562	blood:
2	chr10:92791172..92794052-chr10:92801075..92803431,2	MCF-7	breast:
3	chr10:92802749..92803570-chr10:93008473..93009291,2	MCF-7	breast:

Variant related genes	Relation type
LINC00502	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7091013	1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430255	chr10:92769660-92872941	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv430258	chr10:92770145-92817973	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv430256	chr10:92770145-92872941	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv430260	chr10:92778715-92821721	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv430259	chr10:92778715-92848304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv895887	chr10:92791516-92836763	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92796800-92806800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:92796800-92810600	Weak transcription	Right Atrium	heart
3	chr10:92798000-92803000	Weak transcription	Fetal Muscle Leg	muscle
4	chr10:92798000-92805600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr10:92798000-92810600	Weak transcription	Left Ventricle	heart
6	chr10:92799600-92803000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr10:92799600-92803000	Weak transcription	Fetal Heart	heart
8	chr10:92801600-92804000	Enhancers	Liver	Liver
9	chr10:92802000-92803200	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr10:92802000-92804000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr10:92802200-92803000	Weak transcription	Ovary	ovary
12	chr10:92802400-92803600	Weak transcription	Dnd41	blood
13	chr10:92802600-92803000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:92802600-92806400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr10:92802800-92803200	Enhancers	HepG2	liver

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