Variant report

Variant	rs7076888
Chromosome Location	chr10:97116219-97116220
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs4918916	0.85[ASN][1000 genomes]
rs4918918	0.95[CHB][hapmap];0.81[CHD][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs7079293	0.95[CHB][hapmap];0.85[CHD][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs7900095	0.94[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs955760	0.81[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.84[GIH][hapmap];0.85[JPT][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7076888	PPP1R3C	cis	parietal	SCAN
rs7076888	CYP2C9	cis	parietal	SCAN

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97070400-97139600	Weak transcription	Fetal Brain Male	brain
2	chr10:97094600-97118000	Weak transcription	HSMM	muscle
3	chr10:97099200-97129200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:97102200-97136400	Weak transcription	Fetal Kidney	kidney
5	chr10:97103400-97118000	Strong transcription	Fetal Brain Female	brain
6	chr10:97105000-97118200	Strong transcription	Aorta	Aorta
7	chr10:97107200-97120200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr10:97107200-97151800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr10:97107600-97116600	Genic enhancers	Adipose Nuclei	Adipose
10	chr10:97107600-97119800	Strong transcription	Fetal Stomach	stomach
11	chr10:97107800-97119400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr10:97108600-97119200	Strong transcription	Cortex derived primary cultured neurospheres	brain
13	chr10:97109000-97128200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:97109000-97148000	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr10:97109200-97120000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr10:97110000-97117400	Strong transcription	Brain Germinal Matrix	brain
17	chr10:97110400-97116800	Strong transcription	Brain Cingulate Gyrus	brain
18	chr10:97110400-97116800	Strong transcription	Fetal Intestine Large	intestine
19	chr10:97110400-97116800	Strong transcription	Fetal Muscle Leg	muscle
20	chr10:97110600-97116800	Strong transcription	Brain Angular Gyrus	brain
21	chr10:97110600-97117200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr10:97111000-97116400	Weak transcription	Fetal Heart	heart
23	chr10:97111000-97117400	Strong transcription	Brain Anterior Caudate	brain
24	chr10:97111000-97127400	Weak transcription	Duodenum Mucosa	Duodenum
25	chr10:97111600-97117600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr10:97111800-97117000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr10:97112200-97117200	Strong transcription	Duodenum Smooth Muscle	Duodenum
28	chr10:97112600-97118800	Strong transcription	Brain Hippocampus Middle	brain
29	chr10:97113000-97117600	Strong transcription	Fetal Muscle Trunk	muscle
30	chr10:97113400-97116800	Strong transcription	Brain Inferior Temporal Lobe	brain
31	chr10:97113600-97116400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
32	chr10:97113600-97116800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr10:97113600-97118600	Strong transcription	Fetal Intestine Small	intestine
34	chr10:97113800-97116800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
35	chr10:97114000-97116600	Strong transcription	HUES6 Cell Line	embryonic stem cell
36	chr10:97114000-97117000	Strong transcription	HUES48 Cell Line	embryonic stem cell
37	chr10:97114200-97116400	Strong transcription	HUES64 Cell Line	embryonic stem cell
38	chr10:97114200-97117000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr10:97114200-97118000	Strong transcription	Liver	Liver
40	chr10:97114400-97116400	Strong transcription	Rectal Mucosa Donor 29	rectum
41	chr10:97114400-97116800	Strong transcription	Colon Smooth Muscle	Colon
42	chr10:97114400-97119200	Strong transcription	Skeletal Muscle Female	skeletal muscle
43	chr10:97114400-97119600	Weak transcription	GM12878-XiMat	blood
44	chr10:97114600-97118000	Strong transcription	Skeletal Muscle Male	skeletal muscle
45	chr10:97114800-97117000	Strong transcription	Rectal Smooth Muscle	rectum
46	chr10:97114800-97120800	Genic enhancers	Stomach Smooth Muscle	stomach
47	chr10:97115000-97116400	Strong transcription	H1 Cell Line	embryonic stem cell
48	chr10:97115000-97117400	Strong transcription	Psoas Muscle	Psoas
49	chr10:97115200-97116400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr10:97115200-97116400	Enhancers	Right Atrium	heart

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