Variant report

Variant	rs7076972
Chromosome Location	chr10:61653220-61653221
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:61652458..61655140-chr10:61737942..61740337,2	K562	blood:
2	chr10:61648057..61649845-chr10:61652542..61654790,2	MCF-7	breast:
3	chr10:61629487..61632652-chr10:61653201..61655969,3	K562	blood:
4	chr10:61629487..61631429-chr10:61653201..61655597,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10821608	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10994064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10994066	0.89[EUR][1000 genomes]
rs1125168	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2067800	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3793865	1.00[ASN][1000 genomes]
rs61845907	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795420	chr10:61637271-61669227	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
2	esv1800316	chr10:61639599-61700473	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61625000-61655400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:61637600-61653600	Weak transcription	NHDF-Ad	bronchial
3	chr10:61637800-61653600	Weak transcription	NH-A	brain
4	chr10:61638400-61653600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr10:61638400-61653600	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr10:61638400-61653600	Weak transcription	Osteobl	bone
7	chr10:61641200-61653600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr10:61641600-61655200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr10:61641600-61664200	Weak transcription	A549	lung
10	chr10:61641800-61655400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr10:61643000-61659400	Weak transcription	Hela-S3	cervix
12	chr10:61644600-61655200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr10:61645800-61659400	Weak transcription	Fetal Brain Male	brain
14	chr10:61647000-61655000	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr10:61647200-61653600	Weak transcription	Right Ventricle	heart
16	chr10:61647200-61655400	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr10:61648000-61653600	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr10:61648200-61655200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr10:61648400-61654000	Weak transcription	Psoas Muscle	Psoas
20	chr10:61648600-61657600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr10:61649000-61653600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr10:61649000-61654000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr10:61649200-61653800	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr10:61649200-61654000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr10:61649800-61664200	Weak transcription	Placenta	Placenta
26	chr10:61650000-61653600	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr10:61650000-61653600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr10:61650000-61653600	Weak transcription	Fetal Lung	lung
29	chr10:61650000-61659600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr10:61650000-61659800	Weak transcription	Thymus	Thymus
31	chr10:61650200-61653600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr10:61650200-61653600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr10:61650200-61653600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr10:61650200-61653600	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr10:61650200-61653600	Weak transcription	NHLF	lung
36	chr10:61650200-61654000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr10:61650200-61658000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr10:61650200-61659400	Weak transcription	Fetal Thymus	thymus
39	chr10:61650200-61664000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr10:61650200-61664200	Weak transcription	Fetal Muscle Trunk	muscle
41	chr10:61650400-61653600	Weak transcription	Fetal Brain Female	brain
42	chr10:61650400-61653600	Weak transcription	Fetal Stomach	stomach
43	chr10:61650400-61659600	Weak transcription	Dnd41	blood
44	chr10:61650800-61656200	Enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr10:61651000-61656400	Enhancers	Brain Hippocampus Middle	brain
46	chr10:61651000-61656800	Enhancers	Cortex derived primary cultured neurospheres	brain
47	chr10:61651200-61653600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr10:61651200-61653800	Enhancers	Spleen	Spleen
49	chr10:61651200-61654800	Enhancers	Primary T helper cells fromperipheralblood	blood
50	chr10:61651200-61655000	Enhancers	Right Atrium	heart

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