Variant report

Variant	rs7078046
Chromosome Location	chr10:116703017-116703018
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:116696911..116699473-chr10:116702208..116704843,4	MCF-7	breast:
2	chr10:116697944..116699780-chr10:116701947..116704062,3	MCF-7	breast:
3	chr10:116702780..116705298-chr10:116717545..116719063,2	MCF-7	breast:
4	chr10:116698018..116699998-chr10:116702576..116705255,2	K562	blood:
5	chr10:116702154..116704292-chr10:116706734..116708655,2	K562	blood:

Variant related genes	Relation type
ENSG00000165832	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2184387	1.00[AMR][1000 genomes]
rs7088483	1.00[AMR][1000 genomes]
rs7089161	1.00[AMR][1000 genomes]
rs7091856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv831996	chr10:116601552-116772968	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv1039002	chr10:116643095-116879483	Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	esv2761634	chr10:116643095-116879495	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
8	nsv1045654	chr10:116654574-116879483	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
9	nsv1043242	chr10:116655057-116883386	Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
10	nsv831997	chr10:116689552-116855698	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116698800-116703200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:116698800-116730400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:116698800-116763600	Weak transcription	Esophagus	oesophagus
4	chr10:116699000-116705000	Weak transcription	Colonic Mucosa	Colon
5	chr10:116699000-116706400	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr10:116699200-116704800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr10:116699200-116705200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr10:116699200-116722400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr10:116699200-116722600	Weak transcription	Aorta	Aorta
10	chr10:116699400-116704200	Weak transcription	Stomach Mucosa	stomach
11	chr10:116699400-116708000	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr10:116699600-116736400	Weak transcription	NHLF	lung
13	chr10:116699800-116705000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr10:116699800-116722400	Weak transcription	Fetal Kidney	kidney
15	chr10:116699800-116726200	Weak transcription	K562	blood
16	chr10:116700200-116714800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:116700400-116708200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr10:116700600-116706000	Strong transcription	HUES48 Cell Line	embryonic stem cell
19	chr10:116700600-116706800	Strong transcription	Fetal Muscle Trunk	muscle
20	chr10:116700600-116707000	Strong transcription	Fetal Intestine Large	intestine
21	chr10:116700600-116708800	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr10:116700600-116716000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr10:116700800-116703600	Weak transcription	HUVEC	blood vessel
24	chr10:116700800-116705000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr10:116700800-116705400	Strong transcription	Fetal Brain Female	brain
26	chr10:116700800-116707200	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr10:116700800-116707600	Strong transcription	HUES6 Cell Line	embryonic stem cell
28	chr10:116700800-116709400	Strong transcription	Primary T cells fromperipheralblood	blood
29	chr10:116700800-116709400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr10:116700800-116709600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr10:116700800-116709800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr10:116700800-116713000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
33	chr10:116700800-116722600	Weak transcription	Fetal Brain Male	brain
34	chr10:116701000-116703200	Weak transcription	Colon Smooth Muscle	Colon
35	chr10:116701000-116704000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr10:116701000-116705200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr10:116701000-116705600	Strong transcription	Dnd41	blood
38	chr10:116701000-116706400	Strong transcription	Fetal Stomach	stomach
39	chr10:116701000-116706600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
40	chr10:116701000-116707000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr10:116701000-116707000	Strong transcription	Hela-S3	cervix
42	chr10:116701000-116715000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr10:116701200-116716200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr10:116701400-116703200	Weak transcription	Psoas Muscle	Psoas
45	chr10:116701600-116713800	Strong transcription	Primary T helper cells fromperipheralblood	blood
46	chr10:116701800-116703200	Strong transcription	Primary B cells from cord blood	blood
47	chr10:116701800-116704600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr10:116701800-116706800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr10:116701800-116706800	Strong transcription	Osteobl	bone
50	chr10:116701800-116707200	Strong transcription	Fetal Thymus	thymus

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