Variant report

Variant	rs7078136
Chromosome Location	chr10:52321183-52321184
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:52321176..52321727-chr10:52383601..52384321,2	MCF-7	breast:
2	chr10:52319465..52323601-chr10:52381894..52385353,11	MCF-7	breast:
3	chr10:52319959..52321571-chr10:52382214..52385087,2	K562	blood:
4	chr10:52319643..52322201-chr10:52358538..52360204,2	MCF-7	breast:
5	chr10:52318973..52324648-chr10:52334040..52339164,5	K562	blood:
6	chr10:52313474..52316249-chr10:52319945..52321727,3	K562	blood:
7	chr10:52319893..52329540-chr10:52377624..52388129,20	MCF-7	breast:
8	chr10:52319647..52323316-chr10:52382184..52387388,6	K562	blood:
9	chr10:52176588..52178104-chr10:52321160..52323318,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000226200	Chromatin interaction
ENSG00000198964	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16905719	0.84[AFR][1000 genomes]
rs16906058	0.89[AFR][1000 genomes]
rs16906349	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054775	chr10:51595893-52392361	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1051087	chr10:51886486-52447295	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv916214	chr10:51886486-52458983	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv918212	chr10:51886486-52465482	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv817412	chr10:51911034-52432990	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv469522	chr10:52276564-52447589	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
7	nsv482564	chr10:52276564-52447589	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
8	esv3377695	chr10:52319096-52321394	Enhancers Weak transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52280200-52328000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:52300800-52322800	Weak transcription	Primary B cells from cord blood	blood
3	chr10:52301600-52327200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr10:52305400-52329600	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr10:52306000-52321400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr10:52306000-52322000	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr10:52306000-52331800	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr10:52308000-52337200	Weak transcription	Primary T cells from cord blood	blood
9	chr10:52310400-52323800	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr10:52310600-52323600	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr10:52310600-52327200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:52311000-52323600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr10:52311000-52335800	Weak transcription	Esophagus	oesophagus
14	chr10:52312800-52335800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr10:52312800-52335800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr10:52313000-52322800	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr10:52313200-52333200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr10:52313600-52337400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr10:52315000-52322800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr10:52315000-52329600	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr10:52315200-52323600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr10:52315200-52337400	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr10:52315400-52322000	Weak transcription	Fetal Thymus	thymus
24	chr10:52315600-52323800	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr10:52315600-52336000	Weak transcription	GM12878-XiMat	blood
26	chr10:52316000-52323600	Weak transcription	Fetal Intestine Small	intestine
27	chr10:52316400-52322000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr10:52316400-52322200	Weak transcription	Placenta	Placenta
29	chr10:52316400-52322800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr10:52316400-52323600	Weak transcription	Gastric	stomach
31	chr10:52316400-52325200	Weak transcription	Primary B cells from peripheral blood	blood
32	chr10:52316400-52327200	Weak transcription	Fetal Muscle Leg	muscle
33	chr10:52316400-52331800	Weak transcription	Lung	lung
34	chr10:52316800-52332000	Weak transcription	Aorta	Aorta
35	chr10:52316800-52332600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr10:52318200-52331800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr10:52318400-52323800	Weak transcription	Small Intestine	intestine
38	chr10:52318400-52329600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr10:52319000-52323600	Weak transcription	Left Ventricle	heart
40	chr10:52319200-52335800	Weak transcription	Spleen	Spleen
41	chr10:52319400-52323800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr10:52319600-52335600	Weak transcription	NHEK	skin
43	chr10:52319800-52321200	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr10:52320200-52322200	Enhancers	NHLF	lung
45	chr10:52320400-52321400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr10:52320400-52322000	Enhancers	Cortex derived primary cultured neurospheres	brain
47	chr10:52320400-52325400	Enhancers	Liver	Liver
48	chr10:52320600-52321200	Enhancers	Rectal Smooth Muscle	rectum
49	chr10:52320600-52321400	Enhancers	iPS-20b Cell Line	embryonic stem cell
50	chr10:52320600-52321400	Enhancers	Pancreatic Islets	Pancreatic Islet

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