Variant report

Variant	rs7078493
Chromosome Location	chr10:98204095-98204096
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10732778	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2154204	0.90[GIH][hapmap];1.00[TSI][hapmap]
rs7078372	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv831950	chr10:98080972-98245434	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98201000-98205800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:98201400-98205000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:98201800-98206800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr10:98202000-98208000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr10:98202200-98205400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:98202200-98206600	Weak transcription	Left Ventricle	heart
7	chr10:98202400-98206400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr10:98202400-98206400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr10:98202400-98206400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr10:98202400-98206600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr10:98202400-98206800	Weak transcription	Right Ventricle	heart
12	chr10:98202400-98207000	Weak transcription	Spleen	Spleen
13	chr10:98202400-98207600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr10:98202600-98205000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr10:98202600-98206200	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr10:98202600-98206600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr10:98202600-98206600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr10:98202600-98206600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr10:98202600-98206800	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr10:98202600-98207200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr10:98203000-98206200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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