Variant report

Variant	rs7079061
Chromosome Location	chr10:93299684-93299685
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SETDB1	chr10:93299623-93300185	U2OS	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93297416..93300148-chr10:93300750..93302259,2	MCF-7	breast:

Variant related genes	Relation type
RPS27P1	TF binding region

rs_ID	r²[population]
rs10128490	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11186599	1.00[EUR][1000 genomes]
rs11186600	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11186601	1.00[EUR][1000 genomes]
rs11186603	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12263020	0.81[EUR][1000 genomes]
rs12264531	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12265243	0.81[EUR][1000 genomes]
rs17106727	1.00[EUR][1000 genomes]
rs7076439	1.00[EUR][1000 genomes]

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93296200-93300000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
2	chr10:93296200-93300200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:93296200-93312200	Weak transcription	Psoas Muscle	Psoas
4	chr10:93296600-93300400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr10:93296600-93300800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr10:93296600-93302000	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr10:93296800-93300400	Weak transcription	Aorta	Aorta
8	chr10:93297000-93301200	Weak transcription	Osteobl	bone
9	chr10:93297000-93311400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr10:93297000-93311400	Weak transcription	Left Ventricle	heart
11	chr10:93297200-93300200	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr10:93297200-93300800	Weak transcription	Fetal Brain Male	brain
13	chr10:93297200-93300800	Weak transcription	NHLF	lung
14	chr10:93297200-93301400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr10:93297200-93302000	Weak transcription	Fetal Kidney	kidney
16	chr10:93297400-93300400	Weak transcription	Fetal Stomach	stomach
17	chr10:93297600-93301800	Weak transcription	Ovary	ovary
18	chr10:93298400-93301200	Weak transcription	Liver	Liver
19	chr10:93299200-93300000	Weak transcription	Fetal Lung	lung
20	chr10:93299200-93300000	Weak transcription	Hela-S3	cervix
21	chr10:93299400-93300600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr10:93299400-93311400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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