Variant report

Variant	rs7079409
Chromosome Location	chr10:52848270-52848271
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:52839499..52841510-chr10:52846608..52849576,2	K562	blood:

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10761829	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10761830	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10995555	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2339627	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2339629	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2339630	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2339631	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2339669	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2339672	0.81[CHB][hapmap]
rs2339674	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2879520	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2879521	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2879522	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4245018	0.83[EUR][1000 genomes]
rs4271340	0.82[EUR][1000 genomes]
rs4303185	0.81[CHB][hapmap]
rs4347326	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4347327	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4366435	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4387306	0.83[EUR][1000 genomes]
rs4403758	0.85[EUR][1000 genomes]
rs4436494	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4489691	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4500435	0.89[EUR][1000 genomes]
rs4592377	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4935009	1.00[CEU][hapmap]
rs4935012	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4935218	1.00[CEU][hapmap]
rs4935219	0.81[EUR][1000 genomes]
rs4935223	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4935224	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61849730	0.83[EUR][1000 genomes]
rs6479912	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6479916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7074204	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7074573	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7090857	0.82[EUR][1000 genomes]
rs7094279	0.83[EUR][1000 genomes]
rs7096759	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7096925	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7097013	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7896662	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7897669	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7897940	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7898748	0.81[EUR][1000 genomes]
rs7901390	0.83[EUR][1000 genomes]
rs7902979	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7910047	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7913072	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7913145	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7915110	0.83[EUR][1000 genomes]
rs7918898	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7921037	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7921154	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7922015	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9299465	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9299466	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9414816	0.81[CHB][hapmap]
rs9414820	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9414821	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9414824	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9414826	0.81[EUR][1000 genomes]
rs9415717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9415719	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9415720	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9415722	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9415724	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9415729	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831873	chr10:52710610-52899540	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv895394	chr10:52793177-52866503	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52837200-52849600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr10:52840400-52852200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr10:52843000-52849600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr10:52843600-52856200	Weak transcription	Aorta	Aorta
5	chr10:52844000-52851800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr10:52844000-52852200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr10:52844000-52877200	Weak transcription	Fetal Stomach	stomach
8	chr10:52845400-52849800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr10:52847400-52849600	Weak transcription	Colon Smooth Muscle	Colon

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