Variant report

Variant	rs7079451
Chromosome Location	chr10:5910361-5910362
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:5910241..5913072-chr10:5913979..5917301,3	MCF-7	breast:
2	chr10:5852752..5856561-chr10:5907945..5911516,4	MCF-7	breast:
3	chr10:5910337..5913057-chr10:5913896..5915551,2	K562	blood:
4	chr10:5902878..5905797-chr10:5909283..5911826,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000272764	Chromatin interaction
ENSG00000240180	Chromatin interaction
ENSG00000057608	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs7075421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7079755	0.87[AFR][1000 genomes]
rs7086498	0.82[AFR][1000 genomes]
rs7092985	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7099936	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7903865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7909680	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7913112	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7919286	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7923781	1.00[YRI][hapmap];0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv831775	chr10:5804335-6000849	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv5654	chr10:5868365-5930634	Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv825229	chr10:5886905-5967697	Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv466722	chr10:5893268-5916201	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv549904	chr10:5893268-5916201	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv437655	chr10:5900973-5910361	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5894600-5916800	Weak transcription	Spleen	Spleen
2	chr10:5896200-5912200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr10:5896400-5918200	Weak transcription	Fetal Lung	lung
4	chr10:5900000-5916600	Weak transcription	Pancreas	Pancrea
5	chr10:5900400-5916200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr10:5900600-5916200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr10:5900800-5910600	Weak transcription	Brain Germinal Matrix	brain
8	chr10:5901000-5916600	Weak transcription	Gastric	stomach
9	chr10:5901200-5918200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:5901400-5915200	Weak transcription	Brain Hippocampus Middle	brain
11	chr10:5901600-5912600	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr10:5901600-5915600	Weak transcription	Brain Anterior Caudate	brain
13	chr10:5901800-5910800	Weak transcription	Fetal Brain Female	brain
14	chr10:5902200-5912600	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr10:5902400-5918200	Weak transcription	Primary T cells from cord blood	blood
16	chr10:5902800-5916200	Weak transcription	Fetal Intestine Large	intestine
17	chr10:5902800-5916600	Weak transcription	Brain Substantia Nigra	brain
18	chr10:5902800-5918000	Weak transcription	Lung	lung
19	chr10:5903000-5912400	Weak transcription	Fetal Heart	heart
20	chr10:5903000-5915400	Weak transcription	Duodenum Mucosa	Duodenum
21	chr10:5903400-5911000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr10:5903400-5918200	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr10:5903400-5925000	Weak transcription	Fetal Kidney	kidney
24	chr10:5903600-5916600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr10:5903800-5913600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr10:5903800-5916000	Weak transcription	NHEK	skin
27	chr10:5903800-5916400	Weak transcription	A549	lung
28	chr10:5903800-5918200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr10:5904400-5916200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr10:5904400-5916200	Weak transcription	Aorta	Aorta
31	chr10:5904600-5915600	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr10:5904600-5916200	Weak transcription	NHDF-Ad	bronchial
33	chr10:5904800-5911200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr10:5905000-5910600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr10:5905000-5912000	Weak transcription	Ovary	ovary
36	chr10:5905000-5913400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr10:5905000-5916200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr10:5905000-5916200	Weak transcription	Brain Angular Gyrus	brain
39	chr10:5905200-5918200	Weak transcription	HepG2	liver
40	chr10:5906000-5911000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr10:5907800-5911800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr10:5908800-5918400	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr10:5909400-5915600	Weak transcription	K562	blood
44	chr10:5909400-5916400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr10:5909400-5918200	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr10:5909600-5924800	Weak transcription	Stomach Mucosa	stomach
47	chr10:5909800-5912800	Weak transcription	Psoas Muscle	Psoas
48	chr10:5909800-5914800	Weak transcription	Primary B cells from peripheral blood	blood
49	chr10:5909800-5918200	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr10:5910000-5911600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung

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